Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,061,890 – 1,061,983 |
Length | 93 |
Max. P | 0.985700 |
Location | 1,061,890 – 1,061,983 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 88.71 |
Mean single sequence MFE | -16.20 |
Consensus MFE | -14.51 |
Energy contribution | -14.32 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -2.40 |
Structure conservation index | 0.90 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1061890 93 - 27905053 UUUCUUAACAUCUUAAACUUUAAUACAUUUGCGCAUAAACGUUCGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU ................((((..(((((((((((.((....)).)))))))))))..))))......((((((..........))))))..... ( -18.20) >DroSec_CAF1 34187 93 - 1 UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU ................((((..((((((((((((......))..))))))))))..))))......((((((..........))))))..... ( -16.10) >DroSim_CAF1 34278 93 - 1 UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU ................((((..((((((((((((......))..))))))))))..))))......((((((..........))))))..... ( -16.10) >DroYak_CAF1 34235 92 - 1 UUUCCUAACUUUUUAAUCUUAAAUAGAUUUGAGUCAAUACAUUUGUAAGUGUAUUUAAGAAAUAUACAACGCAUAGAAUUUCGCGUUUACUG- ................(((((((((.(((((...(((.....)))))))).))))))))).......(((((..........))))).....- ( -14.40) >consensus UUUCCUAACUUCUUAAACUUUAAUACAUUUGCGCAAAAACGUUUGUAAAUGUAUCUAAGUAAUAUAAAAUGCAUACAAUUUCGCGUUUACUUU ................((((..(((((((((((..........)))))))))))..))))......((((((..........))))))..... (-14.51 = -14.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:09 2006