Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,265,001 – 7,265,175 |
Length | 174 |
Max. P | 0.783196 |
Location | 7,265,001 – 7,265,104 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.05 |
Mean single sequence MFE | -19.46 |
Consensus MFE | -3.73 |
Energy contribution | -4.33 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.19 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7265001 103 - 27905053 A-GAGAAAGCGAAAAAUGAAAUUCAAAACUGACCAUAUUUUAUCAAAGCUCAAUUUGUAUUAAAUUUCGGAAGCCAUA-------CUUUUCAA-GUAAGGUGCCUUCAUCCC .-..(((.((..................((((....((((...((((......))))....)))).))))..(((.((-------((.....)-))).))))).)))..... ( -14.10) >DroSec_CAF1 1390 103 - 1 A-GGGAAACCGAAAAAUUAAAUUCAAAACUGACCAUGUUUUAUCAAAUCUCAAUUUGUAUUUCAUUUCGGAAGCCAUA-------CUCUUCAA-GUAAGGUGCCUUCAUCCC .-((((..((((((..........(((((.......)))))..(((((....))))).......))))))..(((.((-------((.....)-))).))).......)))) ( -19.90) >DroSim_CAF1 3279 103 - 1 A-GGGAAACCGAAAAAUGAAAUUCAAAACUGACCAUGUUUUAUCAAAGCUCGAUUUGUAUUUCAUUUCGGAAGCCAUA-------CUUUUCAA-GUAAGGUGCCUUCAUCCC .-((((..(((((..(((((((.((((..((((..((......))..).))).)))).))))))))))))..(((.((-------((.....)-))).))).......)))) ( -23.60) >DroEre_CAF1 1379 79 - 1 A-UGGCAACCGAAAAAUUAAAUUUGAAA-------------------------AUUGUAUUUCAUUUCGGAAGCCAUA-------AUUUUCAAAGUAUAGAGGGUUCAUCCC (-((((..((((((.........(((((-------------------------......)))))))))))..))))).-------................(((.....))) ( -17.60) >DroYak_CAF1 1414 107 - 1 AAAGGCAACCGAAAAAUGAAAUUCGAAACUGACCAUGUUUUAUCAAAGCUCAAUUUGUAUUUCAUGUCGGAAGCCAUACUUCAUACUUUUCAAA-----GAUGGUUCAUCCC ...(((..((((...(((((((.((((..((((..((......))..).))).)))).))))))).))))..))).....((((.(((....))-----)))))........ ( -22.10) >consensus A_GGGAAACCGAAAAAUGAAAUUCAAAACUGACCAUGUUUUAUCAAAGCUCAAUUUGUAUUUCAUUUCGGAAGCCAUA_______CUUUUCAA_GUAAGGUGCCUUCAUCCC ...((...((((((....((((.((((..........................)))).))))..))))))...))..................................... ( -3.73 = -4.33 + 0.60)
Location | 7,265,073 – 7,265,175 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 76.17 |
Mean single sequence MFE | -15.34 |
Consensus MFE | -1.46 |
Energy contribution | -3.06 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.33 |
Mean z-score | -1.34 |
Structure conservation index | 0.10 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7265073 102 - 27905053 UCUGAUUGAAGCCAGCAGACAGCUUGCUGUUGAGAAGGAAUCAGACAAGUUGAAUAGUAAAAUUAUUAUCAA-GAGAAAGCGAAAAAUGAAAUUCAAAACUGA (((((((....(((((((.(.....))))))).)....)))))))....((((.(((((....)))))))))-.............................. ( -16.30) >DroSec_CAF1 1462 102 - 1 UCUGAUUGCACGCAGCAGACAGCAUGUAGUUGAAAAGGAAUCAAAAAAGUUGAAUAUUAAAAUUAUUCACAA-GGGAAACCGAAAAAUUAAAUUCAAAACUGA .(((.((((.....)))).)))....(((((......((((.......((.(((((.......)))))))..-((....))..........))))..))))). ( -17.50) >DroSim_CAF1 3351 96 - 1 ------UACAUGCAGCAGACAGCAUGUAGUUGAAAAGGAAUCAAAAAAGUAGAAUAUUAAAAUUAUUCACAA-GGGAAACCGAAAAAUGAAAUUCAAAACUGA ------(((((((........))))))).(((((..............((.(((((.......)))))))..-((....))...........)))))...... ( -19.50) >DroEre_CAF1 1431 90 - 1 UCUGAUUGAAUGCAGCAUACAGCUUGGUGUA--------ACAUGCCAAGAUGAAUAUUAAAAUUAUUGACAA-UGGCAACCGAAAAAUUAAAUUUGAAA---- ((.((((...((((.((.......)).))))--------...(((((...(.((((.......)))).)...-)))))............)))).))..---- ( -12.30) >DroYak_CAF1 1489 103 - 1 UCUGAUUGAAUGCAGUAUACAACAUGAUGUAGAGACGGAAUCAGACAAACUGAAUAUUAAAAUAAUUCACAAAAGGCAACCGAAAAAUGAAAUUCGAAACUGA ............((((.((((......))))....((((.((((.....))))............((((.....((...))......)))).))))..)))). ( -11.10) >consensus UCUGAUUGAAUGCAGCAGACAGCAUGUUGUUGAAAAGGAAUCAGACAAGUUGAAUAUUAAAAUUAUUCACAA_GGGAAACCGAAAAAUGAAAUUCAAAACUGA ..........(((((((.......)))))))..........................................((....))...................... ( -1.46 = -3.06 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:37 2006