Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,262,859 – 7,262,959 |
Length | 100 |
Max. P | 0.604775 |
Location | 7,262,859 – 7,262,959 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 75.80 |
Mean single sequence MFE | -42.42 |
Consensus MFE | -21.36 |
Energy contribution | -22.00 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.30 |
Mean z-score | -1.77 |
Structure conservation index | 0.50 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7262859 100 + 27905053 UUCUGACGGCCCUGAAGAAAUGGGCAGGCACCCUGCCACGCGAGUCGUCGCUGCGGAAGCGAUUCAGGCUCAUCCUGCUGGAAUAG-----------UGUGGUUCCAGAGC (((((...((((.........)))).........((((((((((((((((((.....))))))...))))).(((....)))...)-----------))))))..))))). ( -39.40) >DroPse_CAF1 5710 110 + 1 UCCUCACAGCGCUGAAGAAGUGGGCCAUGACACUGCCGCGGGAGUCGUCGCUGCGCAAGCGGCUGCGACUCAUCCUACUGGAAUAGACGGAAGGUGGUGUCGCUC-AGAGG .((((..((((((.(.....).)))...(((((..((.((.(((((((.(((((....))))).))))))).(((....))).....))...))..)))))))).-.)))) ( -53.40) >DroSec_CAF1 5416 100 + 1 UUCUGACGGCGCUGAAGAAAUGGGCAGGCACCCUGCCACGCGAGUCGUCGCUGCGGAAGCGAUUCAGGCUCAUCCUGCUGGAAUAG-----------UGUGGUUCCAGAGC (((((((.((((((........((((((...))))))....(((((((((((.....))))))...))))).(((....))).)))-----------))).))..))))). ( -39.40) >DroSim_CAF1 5205 100 + 1 UUCUGACGGCCCUGAAGAAAUGGGCAGGCACCCUGCCACGCGAGUCGUCGCUGCGGAAGCGAUUCAGGCUCAUCCUGCUGGAAUAG-----------UGUGGUUCCAGAGC (((((...((((.........)))).........((((((((((((((((((.....))))))...))))).(((....)))...)-----------))))))..))))). ( -39.40) >DroMoj_CAF1 5691 103 + 1 UUUUGACGGCCAUGAAGAAAUGGGCGAUGACCUUGCCACGAGAGUCGUCUCUGCGUAAGCGCUUGCGUCUCAUACUGAUGGAGUAGACCAAAAU-AG-----UUGC--UGU .....(((((.((((.((..(((((((((((((((...)))).))))))...((....)))))))..))))))((((.(((......)))...)-))-----).))--))) ( -29.50) >DroPer_CAF1 5429 110 + 1 UCCUCACAGCGCUGAAGAAGUGGGCCAUGACACUGCCGCGGGAGUCGUCGCUGCGCAAGCGGCUGCGACUCAUCCUACUGGAAUAGACGGAAGGUGGUGUCGCUC-AGAGG .((((..((((((.(.....).)))...(((((..((.((.(((((((.(((((....))))).))))))).(((....))).....))...))..)))))))).-.)))) ( -53.40) >consensus UUCUGACGGCCCUGAAGAAAUGGGCAAGCACCCUGCCACGCGAGUCGUCGCUGCGGAAGCGAUUCAGGCUCAUCCUGCUGGAAUAG___________UGUGGUUCCAGAGC ......((((............(((((.....)))))....(((((((((((.....))))))...))))).....))))............................... (-21.36 = -22.00 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:34 2006