Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,257,546 – 7,257,653 |
Length | 107 |
Max. P | 0.661208 |
Location | 7,257,546 – 7,257,653 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 68.86 |
Mean single sequence MFE | -26.79 |
Consensus MFE | -14.71 |
Energy contribution | -16.40 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.16 |
Mean z-score | -1.52 |
Structure conservation index | 0.55 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7257546 107 + 27905053 AC-AUCGCAUGCGCUCG---CCAGUUUGCACCAGCUGUUGCGCCAGCUGAUCGCCCGCUCAUGCGCUGGUCACACCGCCAGCAUCCAAACAAA--CAGAGCAGCAGACCAAGA ..-......(((((((.---...(((((...((((((......)))))).......((....))((((((......))))))...)))))...--..)))).)))........ ( -33.30) >DroEre_CAF1 1722 93 + 1 ACCAUC---------------CAGUUCGCAUCAGCUGUUGCGCCAGCUGAUCUCCCGCUGCCGCGCUGGUCACACCGCUAGCAUCCAAACAAA--CCGAG---CAGACCCAGA ......---------------..(((((.((((((((......)))))))).....((((..(((.((....)).)))))))...........--.))))---)......... ( -25.50) >DroYak_CAF1 1690 90 + 1 AC-AUC-----------------GUUCGCAUCAGCUGUUGCGCCAGCUGAUAGCCCGCUGCUGCACUGGUCACACCGCCAGCAUCCAAACAAA--CCGAG---CAGACCCAGA ..-...-----------------((((((((((((((......)))))))).))....(((((...(((.....))).)))))..........--..)))---)......... ( -26.10) >DroAna_CAF1 1742 107 + 1 A---ACAUAUCCGCCUGAUUCCACUUGCAAACAGCUGAUGCAACAGCUGAUGUAUCUGUGAAACCCUGGUCACACUUCCAGCAUCCAAACAAUAUCUUCG---CAGACUCGAA .---((((....((..(......)..))...((((((......)))))))))).((((((((...((((........))))...............))))---))))...... ( -22.27) >consensus AC_AUC_______________CAGUUCGCAUCAGCUGUUGCGCCAGCUGAUCGCCCGCUGAUGCGCUGGUCACACCGCCAGCAUCCAAACAAA__CCGAG___CAGACCCAGA .....................((((..((((((((((......)))))))).))..))))....(((((........)))))............................... (-14.71 = -16.40 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:33 2006