Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,242,303 – 7,242,416 |
Length | 113 |
Max. P | 0.805122 |
Location | 7,242,303 – 7,242,416 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 77.81 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -15.90 |
Energy contribution | -14.90 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.33 |
Mean z-score | -1.96 |
Structure conservation index | 0.55 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7242303 113 - 27905053 GAACACGUCUUAAUAUACUGCGAAUCC-ACAGGGACAUUUUUCCGCUCUAUCGGAUCUCGUACAUGUGGUACACCACGUUCGGUGCCUCCAUUACGAUUUUCGUGGCAUUGCUA ...................((((..((-((.((((.....))))........(((..(((((...((((..((((......))))...)))))))))..)))))))..)))).. ( -28.80) >DroPse_CAF1 3753 109 - 1 C----UAUUUUAAU-UCCUUUUAUUCGAAAAGGGAUAUCUUCCCAUUGUACCGCAUCUCGUACAUGUGGUACACGACCUUUGGCGCUUCGAUUACCAUUAUUGUGGCGCUGCUC .----.........-.........(((....((((.....))))..((((((((((.......))))))))))))).....((((((.((((.......)))).)))))).... ( -32.40) >DroSec_CAF1 4085 113 - 1 GAACACAUCUUAAUAUACUCUGAAUCG-ACAGGGACAUUUUUCCGCUCUAUCGGAUCUCGUACAUGUGGUACACCACGUUCGGGGCCUCCAUUACGAUUAUCGUGGCGCUGCUG .................(((((.....-.))))).........(((......((((((((...((((((....)))))).)))))..)))..((((.....)))))))...... ( -26.20) >DroEre_CAF1 3962 113 - 1 GAGCACUUCCUAUCACUCUCCAAACCU-ACAGGGACAUUUUUCCGCUCUAUCGCAUCUCGUACAUGUGGUACACCACUUUUGGUGCCUCCAUUACGAUAAUCGUGGCACUGCUG .((((......................-...((((.....))))(((....((....(((((...((((..(((((....)))))...)))))))))....)).)))..)))). ( -23.50) >DroYak_CAF1 3978 113 - 1 AAGCAUUUUCUACGAUUCUCCAAAUCU-AUAGGGAAAUUUUUCCACUCUAUCGGAUCUCGUACAUGUGGUACACCACUUUCGGUGCCUCCAUUACGAUUAUCGUGGCACUGCUG .((((....(((((((.......((((-((((((...........)))))).)))).(((((...((((..((((......))))...)))))))))..)))))))...)))). ( -29.60) >DroPer_CAF1 3748 109 - 1 C----UAUUUUAAU-UUCUUUUAUUCGAAAAGGGAUAUCUUCCCAUUGUACCGCAUCUCGUACAUGUGGUACACGACCUUUGGCGCUUCGAUUACCAUUAUUGUGGCGCUGCUC .----.........-.........(((....((((.....))))..((((((((((.......))))))))))))).....((((((.((((.......)))).)))))).... ( -32.40) >consensus GA_CACAUCUUAAUAUUCUCCAAAUCG_ACAGGGACAUUUUUCCACUCUAUCGCAUCUCGUACAUGUGGUACACCACCUUCGGUGCCUCCAUUACGAUUAUCGUGGCACUGCUG ...............................((((.....))))...............((((.....))))........(((((((.................)))))))... (-15.90 = -14.90 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006