Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,241,150 – 7,241,243 |
Length | 93 |
Max. P | 0.754639 |
Location | 7,241,150 – 7,241,243 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -13.31 |
Energy contribution | -14.42 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.11 |
Mean z-score | -2.34 |
Structure conservation index | 0.54 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7241150 93 + 27905053 AGUUUGUACUCACAAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUGAAAUUG-----AGUUUACAAACUUUGCAU ((((((((((((....(((((......))))).((((.(((((((...........))))))).)))).....))-----)))..)))))))...... ( -27.70) >DroSec_CAF1 2939 93 + 1 AGUUUGUGCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUAAAAUUG-----AGUUUACGAACUUUCCAU ((((((((((((....(((((......))))).((((.(((((((...........))))))).)))).....))-----)))..)))))))...... ( -27.70) >DroSim_CAF1 2738 93 + 1 AGUUUGUGCUCACCAACUGGCUCUCCCGCCAAAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUGAAAUUG-----AGUUUACAAACUUUCCAU ((((((((((((.....((((......))))..((((.(((((((...........))))))).)))).....))-----)))..)))))))...... ( -24.70) >DroEre_CAF1 2739 93 + 1 AGUUUGUUCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUUGGCAACUAUGAGCGAAAGGUAAGUGAACUUG-----AAAUUCCAAACUUUCCUU ((((((.............((((....(((((((......)))))))......))))(((...((((....))))-----...)))))))))...... ( -21.20) >DroYak_CAF1 2742 98 + 1 AGUUCGUUCUCACCAACUGGCUCUCUCGCCAGAACUCCUUUUUCGGAAACUACGAGCGCAAGGUAAGUGAACUUACUUCCAAUUUCCAAACAUAACUU .((((((.........(((((......)))))...(((......)))....))))))...(((((((....))))))).................... ( -24.70) >DroAna_CAF1 2765 92 + 1 AGUUCGUCCUCACUAACUGGCUUUCUCGCCAGAACUCCUUCUUCGGCAUAUAUGAACGAAAGGUAGUCCCUAUAG-----UUUUUUCAGCCACGG-AG ..(((((.........(((((......)))))............(((......((((...(((.....)))...)-----))).....)))))))-). ( -20.90) >consensus AGUUUGUGCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUAAGUGAAAUUG_____AGUUUACAAACUUUCCAU .(((((..((((....(((((......)))))...(((......))).....))))(....)........................)))))....... (-13.31 = -14.42 + 1.11)
Location | 7,241,150 – 7,241,243 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -16.07 |
Energy contribution | -16.68 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.13 |
Mean z-score | -1.59 |
Structure conservation index | 0.62 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7241150 93 - 27905053 AUGCAAAGUUUGUAAACU-----CAAUUUCACUCACCUUUCGCUCAUAGUUUCCGAAAAAGGAGUUCUGGCGGGAGAGCCAGUUUGUGAGUACAAACU ......(((((((..(((-----((.....(((..(((..(((.((....((((......))))...)))))..)).)..)))...)))))))))))) ( -26.20) >DroSec_CAF1 2939 93 - 1 AUGGAAAGUUCGUAAACU-----CAAUUUUACUCACCUUUCGCUCAUAGUUUCCGAAAAAGGAGUUCUGGCGGGAGAGCCAGUUGGUGAGCACAAACU ...(((((...(((((..-----....)))))....)))))((((((...((((......))))..(((((......)))))...))))))....... ( -26.60) >DroSim_CAF1 2738 93 - 1 AUGGAAAGUUUGUAAACU-----CAAUUUCACUCACCUUUCGCUCAUAGUUUCCGAAAAAGGAGUUUUGGCGGGAGAGCCAGUUGGUGAGCACAAACU ......(((((((...((-----(............((..(((.((....((((......))))...)))))..)).(((....)))))).))))))) ( -25.70) >DroEre_CAF1 2739 93 - 1 AAGGAAAGUUUGGAAUUU-----CAAGUUCACUUACCUUUCGCUCAUAGUUGCCAAAAAAGGAGUUCUGGCGGGAGAGCCAGUUGGUGAGAACAAACU ......((((((((((..-----...)))).((((((....((((....((....))....)))).(((((......)))))..))))))..)))))) ( -25.90) >DroYak_CAF1 2742 98 - 1 AAGUUAUGUUUGGAAAUUGGAAGUAAGUUCACUUACCUUGCGCUCGUAGUUUCCGAAAAAGGAGUUCUGGCGAGAGAGCCAGUUGGUGAGAACGAACU .((((.(((((...((((((..(((((....)))))(((...(((((((.((((......))))..)).))))).))))))))).....))))))))) ( -27.30) >DroAna_CAF1 2765 92 - 1 CU-CCGUGGCUGAAAAAA-----CUAUAGGGACUACCUUUCGUUCAUAUAUGCCGAAGAAGGAGUUCUGGCGAGAAAGCCAGUUAGUGAGGACGAACU .(-((.(.(((((.....-----.....((((((.(((((..(((.........))))))))))))))(((......)))..))))).))))...... ( -23.00) >consensus AUGGAAAGUUUGUAAACU_____CAAUUUCACUCACCUUUCGCUCAUAGUUUCCGAAAAAGGAGUUCUGGCGGGAGAGCCAGUUGGUGAGAACAAACU ...............................((((((.............((((......))))..(((((......)))))..))))))........ (-16.07 = -16.68 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:24 2006