Locus 2689

Sequence ID 3R_DroMel_CAF1
Location 7,230,528 – 7,230,626
Length 98
Max. P 0.969036
window4366

overview

Window 6

Location 7,230,528 – 7,230,626
Length 98
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 96.23
Mean single sequence MFE -12.85
Consensus MFE -10.97
Energy contribution -11.37
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.85
SVM decision value 1.64
SVM RNA-class probability 0.969036
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7230528 98 + 27905053
AAAAAUUGUAUAAAGAAAUUAAACGUGUAAAAAGUAUAAA-AAUUUAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGUAAACGU---
.....((((.((((....(((.((.........)).))).-..)))).)))).......(((.(.((....)).).)))....(((....)))......--- ( -13.10)
>DroSec_CAF1 62311 98 + 1
AAAAAUUGUAUAAAGAAAUUAAUCGUGUAAAAAGUAUAAA-AAUUUAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGUAAACGU---
......................((((((.....((.(((.-...))).))....((((..((....)).))))..))))))..(((....)))......--- ( -13.20)
>DroSim_CAF1 59002 98 + 1
AAAAAUUGUAUAAAGAAAUUAAUCGUGUAAAAAGUAUAAA-AAUUAAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGUAAACGU---
....(((((...((....)).(((((......(((.....-.............)))..))))).))))).((...(((....)))...))........--- ( -12.17)
>DroEre_CAF1 67325 102 + 1
AAAAAUUGUAUAAAGAAAUUAAUCGUGUAAAAAGUAUAAAAAAUUUAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGAAAACGUAAA
....(((((...((....)).(((((.......((.(((.....))).)).........))))).))))).((...(((....)))...))........... ( -12.89)
>DroYak_CAF1 67788 102 + 1
AAAAAUUGUAUAAAGAAAUUAAUCGUGUAAAAAGUAUAAAAAAUUUAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGAAAACGUAAA
....(((((...((....)).(((((.......((.(((.....))).)).........))))).))))).((...(((....)))...))........... ( -12.89)
>consensus
AAAAAUUGUAUAAAGAAAUUAAUCGUGUAAAAAGUAUAAA_AAUUUAAACAAAAACUAAGCGAUGACGAUGGUGAACGCGAAAGCGGAAACGUAAACGU___
....(((((............(((((.......((.(((.....))).)).........))))).))))).((...(((....)))...))........... (-10.97 = -11.37 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:18 2006