Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,220,990 – 7,221,119 |
Length | 129 |
Max. P | 0.989612 |
Location | 7,220,990 – 7,221,091 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -15.77 |
Energy contribution | -17.02 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.07 |
Structure conservation index | 0.77 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7220990 101 + 27905053 ACAUUUAUACUA-ACAUAAACAUACAUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCACAAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAA ...(((((..((-((............(((((....)))))...((((((...((((((((((.......))))))))))....)))..)))))))))))). ( -23.10) >DroSec_CAF1 52866 101 + 1 ACAUUUAUACUA-ACAUAAACAUACAUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAA ...(((((..((-((............(((((....)))))...((((((...((((((((((.......))))))))))....)))..)))))))))))). ( -23.10) >DroSim_CAF1 49535 101 + 1 ACAUUUAUACUA-ACAUAAACAUACAUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAA ...(((((..((-((............(((((....)))))...((((((...((((((((((.......))))))))))....)))..)))))))))))). ( -23.10) >DroEre_CAF1 57972 101 + 1 ACAUUUAUACUU-ACAUAAACAUACAUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCACCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAA .((.((((....-..............(((((....)))))............((((((((((.......)))))))))).....)))).)).......... ( -21.60) >DroAna_CAF1 51964 90 + 1 ACAUUUAUACUAAACAUAAACAUACAUACUUAAACUUAAGUCAACAAGUCUAGAGG-C-AACCAG----------GUCUCGAACGAUAAUUGGUUAAUAAAA ...((((((((((..............(((((....)))))......(((..((((-(-......----------)))))....)))..)))))..))))). ( -11.10) >consensus ACAUUUAUACUA_ACAUAAACAUACAUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAA .((.((((...................(((((....)))))............((((((((((.......)))))))))).....)))).)).......... (-15.77 = -17.02 + 1.25)
Location | 7,221,014 – 7,221,119 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.94 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -11.68 |
Energy contribution | -14.17 |
Covariance contribution | 2.49 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.65 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7221014 105 + 27905053 AUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCACAAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAAAA-------AACAGAAAACA ..(((((....)))))......(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..)...-------........... ( -23.30) >DroPse_CAF1 87821 80 + 1 AUACUUAAACUUAAGUCAA---GUCAAAAAAACG---------------------AGACGAUAAUUGGUUAAUAAAAGCGAAAUUCAUUGAGAA-------AACAGAAAAC- .........((((((((..---((.......)).---------------------.)))((...((.(((......))).))..)).)))))..-------..........- ( -7.10) >DroSec_CAF1 52890 105 + 1 AUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAA-------AACAGAAAACA ..(((((....)))))......(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..)...-------........... ( -23.30) >DroSim_CAF1 49559 105 + 1 AUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAA-------AACAGAAAACA ..(((((....)))))......(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..)...-------........... ( -23.30) >DroYak_CAF1 58333 105 + 1 AUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCACCAAAGGGUCCGUCACGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAA-------AACAGAAAACA ..(((((....)))))......(((...(.((((((((.......)))))))).)....)))..(..((((((.........))))))..)...-------........... ( -19.30) >DroAna_CAF1 51989 100 + 1 AUACUUAAACUUAAGUCAACAAGUCUAGAGG-C-AACCAG----------GUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUUAUUGAAAAAAAAAAAAAAAGAAAACA ..(((((....))))).......(((.((((-(-......----------)))))...((((((((.(((......))).))..))))))..............)))..... ( -12.20) >consensus AUACUUAAACUUAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAA_______AACAGAAAACA ..(((((....)))))......(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..)..................... (-11.68 = -14.17 + 2.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:13 2006