| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,218,532 – 7,218,625 |
| Length | 93 |
| Max. P | 0.842981 |
| Location | 7,218,532 – 7,218,625 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.41 |
| Mean single sequence MFE | -10.16 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7218532 93 + 27905053 UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUACACAAUAACCACACGCAUUCCACGCACACGCACACACACACA---CGCUCGCAUCGGU .(((((.............((((....))))..............................((....))...........---........))))) ( -10.40) >DroSec_CAF1 50423 91 + 1 UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUACACAAUAACCACACGCAUUCCACGCACAC--ACAUACACACA---CGCUCGCAUCGGU .(((((.............((((....)))).....................((.......))....--...........---........))))) ( -10.10) >DroSim_CAF1 47088 91 + 1 UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUACACAAUAACCACACGCAUUCCACGCACAC--ACAUACACACA---CGCUCGCAUCGGU .(((((.............((((....)))).....................((.......))....--...........---........))))) ( -10.10) >DroEre_CAF1 55547 87 + 1 UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUACACAAUAACCACACGCAUUCCACGCACAC--ACACACA-------CGCUCGCAUCGGU .(((((.............((((....)))).....................((.......))....--.......-------........))))) ( -10.10) >DroYak_CAF1 55855 94 + 1 UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUAUACAAUAACCACACGCAUUCCACGCACAC--ACACACAGAAACAUCGCUCGCAUCGGU .(((((.............((((....)))).....................((.......))....--......................))))) ( -10.10) >consensus UACCGAAAGUUGACACACAUUCCACAAGGAAAUACCUACACAAUAACCACACGCAUUCCACGCACAC__ACACACACACA___CGCUCGCAUCGGU .(((((.............((((....)))).....................((.......))............................))))) (-10.10 = -10.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:09 2006