Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,218,235 – 7,218,346 |
Length | 111 |
Max. P | 0.685677 |
Location | 7,218,235 – 7,218,346 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 78.58 |
Mean single sequence MFE | -21.45 |
Consensus MFE | -14.70 |
Energy contribution | -15.70 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -1.30 |
Structure conservation index | 0.69 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7218235 111 - 27905053 ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCUUUUUUCUU-------GUCGCUCUUU ........((((((((((((((........).))))))))))))).((......((((.((.((((......)))))))))).....))............-------.......... ( -22.20) >DroSec_CAF1 50135 102 - 1 ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGG--------CUUCAU-AUUCUU-------GUCACUCUUU ........((((((((((((((........).))))))))))))).........((((.((.((((......))))))))--------))....-......-------.......... ( -18.70) >DroSim_CAF1 46791 110 - 1 ACAUUAUUAGAUUAAAACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCAU-AUUCUU-------GUCACUCUUU ........((((((((((((((........).))))))))))))).((......((((.((.((((......)))))))))).....)).....-......-------.......... ( -22.10) >DroEre_CAF1 55249 110 - 1 ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUUGGCCCACUGGAUUUGGAUAUCCGUGGCCCACAUGCUUCAU-GUUCUU-------GUCGCUUUUU ........((((((((((((((........).))))))))))))).((.(((..((.((((.((((......)))))))).))(((((...)))-))..))-------)..))..... ( -24.90) >DroYak_CAF1 55559 110 - 1 ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUUGGCCCACCGGAUUUGCAUAUCCGUGGCCCACAUGCUUCAU-CUUCUU-------GUCGCUCUUU ........((((((((((((((........).)))))))))))))........(((.((((.((((......)))))))).)))...((..((.-.....)-------)..))..... ( -24.30) >DroPer_CAF1 88221 98 - 1 ACAU---AAGAUUAAGAUUUUAGGUUU--UUUUUAGUUUUGGUUUUA----------GCAUUGGAUGCGA----UCGAAGCUCGCAUCUCUCAU-CCUCUUCUUCACUCUCUCUUCUU ...(---((((((((((((........--.....)))))))))))))----------.....((((((((----.......)))))))).....-....................... ( -16.52) >consensus ACAUUAUUAGAUUAAGACUUGCUGCUCUAUGUUAAGUUUUGGUUUUGCUCAAUCGGCCCACUGGAUUUGUAUAUCCGUGGCCCACAUGCUUCAU_AUUCUU_______GUCGCUCUUU ........((((((((((((((........).))))))))))))).........((.((((.((((......)))))))).))................................... (-14.70 = -15.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:08 2006