Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,203,078 – 7,203,169 |
Length | 91 |
Max. P | 0.976850 |
Location | 7,203,078 – 7,203,169 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 71.21 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -14.72 |
Energy contribution | -16.52 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.16 |
Mean z-score | -1.96 |
Structure conservation index | 0.60 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7203078 91 - 27905053 CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU-CCACCUUCCUUUCUACCACUACUACUACUU ........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -28.10) >DroSec_CAF1 44149 91 - 1 CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUAUCUGGCCCCUUU-CCACCUUCCUUUCUACCACUACUACUACUA ........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -25.50) >DroEre_CAF1 49267 91 - 1 CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU-CCACCUUCCUUUCUGCCACAACUACUACUU ........((((.(((((.....)))))((...((((((((((.....))))))))))...-))............))))............ ( -28.40) >DroWil_CAF1 70089 77 - 1 CACUUGAUUGGUUUCGUUUUGUAAGCGAGG------------UUAAGCACCCCC---AGUGACUGGGAUUGGGACUGAAACUGGGAUUGGGA ..((..((((((((((((..(...((....------------....))...(((---((...)))))..)..))).))))))..)))..)). ( -21.50) >DroYak_CAF1 49504 82 - 1 CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCC----------CCCUUUCUACCACAACUACUACUU ........((((...(((.((..((.((((...((((((((((.....))))))))))----------.)))).))..)).))).))))... ( -27.90) >DroAna_CAF1 43209 75 - 1 CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUACG-GGUCGGGUUAAGUACUUUGGCUUU-----GGCUUUCUUUGGCUCAG----------- .....((((.((((((((.....))))))..)).-))))((((((((......(((...-----.)))...))))))))..----------- ( -16.80) >consensus CACUUGAUUGGUUUCGUUUUGUAAGCGAGGUCCGGGGUCGGGUUAAGUACCUGGCCCCUUU_CCACCUUCCUUUCUACCACUACUACUACUU .........(((((((((.....))))))).))((((((((((.....)))))))))).................................. (-14.72 = -16.52 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:02 2006