Locus 268

Sequence ID 3R_DroMel_CAF1
Location 1,057,910 – 1,058,027
Length 117
Max. P 0.516619
window466

overview

Window 6

Location 1,057,910 – 1,058,027
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 87.47
Mean single sequence MFE -37.48
Consensus MFE -25.70
Energy contribution -26.42
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.516619
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1057910 117 - 27905053
GC-UCUGGAAACAAUCGAUAGUCGCCGACUGUUGCACACAGGGAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCCCGCAUCACCAGAGCACGCACAUCACUAG
((-(((((.....(((((((((((.(..(((((((...........))))))).((((.(....).))))).)))).)))))))..((...))....))))))).............. ( -40.20)
>DroSec_CAF1 30185 116 - 1
GC-CCUGCAAACUAUCGAUAGCCGCCUACUGUUGCAC-UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCGCUCAUCACCAGAGCACGCACAUCACUAG
..-..(((....((((((((((((((..(((((((..-........)))))))))))))...(((....))).....))))))))....((((.......))))..)))......... ( -36.20)
>DroSim_CAF1 30263 116 - 1
GC-CCUGCAAACUAUCGAUAGCCGCCGACUGUUGCAC-UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUGAGCCGCUCAUCACCAGAGCACGCACAUCACUAG
..-..(((....((((((((((((((..(((((((..-........)))))))))))))...(((....))).....))))))))....((((.......))))..)))......... ( -35.90)
>DroEre_CAF1 29253 117 - 1
CC-CCUGGAAACUAUCGAUAACCACCGACUGUUGCACCUACCGAACGCAACAGGGUGGUCAAGUUUCCGGGCCGAUGUAUCGAUAAUCCGCUCAACACCAGAGCAUGCACAUCGCUAG
..-((((((((((.......((((((..(((((((...........)))))))))))))..)))))))))).((((((...(......)((((.......))))....)))))).... ( -41.40)
>DroYak_CAF1 29628 118 - 1
CCUCCUGGAAACUAUCGAUAACCGCCGACUGUUGCACUACCCUGACGCAACAGGGUGGUCAAGUGUCUGGACCGAUGAAUCAAUAAGCCGCGCAUCACCAGAGCAGUCACAUCGCUAG
((....))...(((.((((.......((((((((.(((((((((......)))))))))))....(((((...((((...(........)..)))).)))))))))))..)))).))) ( -33.70)
>consensus
GC_CCUGGAAACUAUCGAUAGCCGCCGACUGUUGCAC_UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCGCUCAUCACCAGAGCACGCACAUCACUAG
....((((....((((((((((((((..(((((((...........)))))))))))))...(((....))).....))))))))....((((.......))))..........)))) (-25.70 = -26.42 +   0.72) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:07 2006