Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,057,910 – 1,058,027 |
Length | 117 |
Max. P | 0.516619 |
Location | 1,057,910 – 1,058,027 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -25.70 |
Energy contribution | -26.42 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.19 |
Mean z-score | -1.77 |
Structure conservation index | 0.69 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1057910 117 - 27905053 GC-UCUGGAAACAAUCGAUAGUCGCCGACUGUUGCACACAGGGAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCCCGCAUCACCAGAGCACGCACAUCACUAG ((-(((((.....(((((((((((.(..(((((((...........))))))).((((.(....).))))).)))).)))))))..((...))....))))))).............. ( -40.20) >DroSec_CAF1 30185 116 - 1 GC-CCUGCAAACUAUCGAUAGCCGCCUACUGUUGCAC-UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCGCUCAUCACCAGAGCACGCACAUCACUAG ..-..(((....((((((((((((((..(((((((..-........)))))))))))))...(((....))).....))))))))....((((.......))))..)))......... ( -36.20) >DroSim_CAF1 30263 116 - 1 GC-CCUGCAAACUAUCGAUAGCCGCCGACUGUUGCAC-UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUGAGCCGCUCAUCACCAGAGCACGCACAUCACUAG ..-..(((....((((((((((((((..(((((((..-........)))))))))))))...(((....))).....))))))))....((((.......))))..)))......... ( -35.90) >DroEre_CAF1 29253 117 - 1 CC-CCUGGAAACUAUCGAUAACCACCGACUGUUGCACCUACCGAACGCAACAGGGUGGUCAAGUUUCCGGGCCGAUGUAUCGAUAAUCCGCUCAACACCAGAGCAUGCACAUCGCUAG ..-((((((((((.......((((((..(((((((...........)))))))))))))..)))))))))).((((((...(......)((((.......))))....)))))).... ( -41.40) >DroYak_CAF1 29628 118 - 1 CCUCCUGGAAACUAUCGAUAACCGCCGACUGUUGCACUACCCUGACGCAACAGGGUGGUCAAGUGUCUGGACCGAUGAAUCAAUAAGCCGCGCAUCACCAGAGCAGUCACAUCGCUAG ((....))...(((.((((.......((((((((.(((((((((......)))))))))))....(((((...((((...(........)..)))).)))))))))))..)))).))) ( -33.70) >consensus GC_CCUGGAAACUAUCGAUAGCCGCCGACUGUUGCAC_UACCAAACGCAACAGGGUGGUCAAGUGUCCGCGCCGAUGUAUCGAUAAGCCGCUCAUCACCAGAGCACGCACAUCACUAG ....((((....((((((((((((((..(((((((...........)))))))))))))...(((....))).....))))))))....((((.......))))..........)))) (-25.70 = -26.42 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:07 2006