Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,193,100 – 7,193,193 |
Length | 93 |
Max. P | 0.871290 |
Location | 7,193,100 – 7,193,193 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -26.89 |
Energy contribution | -27.75 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.03 |
Mean z-score | -2.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7193100 93 + 27905053 GGAAAAAUGAGCAAUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAAUACUAGUAUACGUAUC ..........((((((((((((((..((((((....))))))...)).)))...)))))))))(((.(((((......)))))..)))..... ( -31.20) >DroSec_CAF1 33845 93 + 1 GGAAAAAUGAGCAGCGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAAUACUAGUGUACGUAUC ((((..(((.((.((....)).((..((((((....))))))...))..)))))))))..((((((((((((......))))).))))))).. ( -33.20) >DroSim_CAF1 33846 93 + 1 GGAAAAAUGAGCAGUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAAUACUAGUGUUCGUAUC ......(((((((.(((...((((((.((((.((.(((((((.....)))))))......)).).))).))))))....))).)))))))... ( -39.20) >DroEre_CAF1 39289 90 + 1 GGAA-AAUGAGCAGUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAACACUAGU--ACGUAUC ....-.(((.((((((....((((((.((((.((.(((((((.....)))))))......)).).))).))))))..)))).))--.)))... ( -33.90) >DroYak_CAF1 39581 91 + 1 GGAAAAAUGAGCAGUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAAUACUAGU--ACGUAUC ..........((((((((((((((..((((((....))))))...)).)))...)))))))))((((.((((......))))))--))..... ( -33.20) >DroAna_CAF1 33045 82 + 1 UGAAAAAUGAGCAGUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGC---UGCCAUUGCGUGCCUGGCCCGUAUCC--------GUAUC ..........(((((((.((((((..((((((....))))))...)).)))---).))))))).................--------..... ( -31.30) >consensus GGAAAAAUGAGCAGUGGGAGCCGACUUGGCCACAUAUGGCCAUUUUCUGGCCAUUUCCAUUGCGUGCCUGGUCGGAAUACUAGU__ACGUAUC ..........((((((((((((((..((((((....))))))...)).)))...)))))))))(((((((((......))))).....)))). (-26.89 = -27.75 + 0.86)
Location | 7,193,100 – 7,193,193 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.43 |
Mean single sequence MFE | -28.83 |
Consensus MFE | -24.59 |
Energy contribution | -25.32 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.08 |
Mean z-score | -2.04 |
Structure conservation index | 0.85 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7193100 93 - 27905053 GAUACGUAUACUAGUAUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCAUUGCUCAUUUUUCC (((((........)))))((.....))...(((((((..(((((((.....)))))))....((((.....)))).))))))).......... ( -29.50) >DroSec_CAF1 33845 93 - 1 GAUACGUACACUAGUAUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCGCUGCUCAUUUUUCC (((((........)))))(((((..(((.((((......(((((((.....))))))).)))))))..))))).................... ( -28.60) >DroSim_CAF1 33846 93 - 1 GAUACGAACACUAGUAUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCACUGCUCAUUUUUCC (((((........)))))(((((..(((.((((......(((((((.....))))))).)))))))..))))).................... ( -28.60) >DroEre_CAF1 39289 90 - 1 GAUACGU--ACUAGUGUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCACUGCUCAUU-UUCC .......--..(((((..(((((..(((.((((......(((((((.....))))))).)))))))..)))))....)))))......-.... ( -30.50) >DroYak_CAF1 39581 91 - 1 GAUACGU--ACUAGUAUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCACUGCUCAUUUUUCC (((((..--....)))))(((((..(((.((((......(((((((.....))))))).)))))))..))))).................... ( -28.80) >DroAna_CAF1 33045 82 - 1 GAUAC--------GGAUACGGGCCAGGCACGCAAUGGCA---GCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCACUGCUCAUUUUUCA ....(--------(....))..........(((.(((.(---(((.((...((((((....))))))..)))))).))).))).......... ( -27.00) >consensus GAUACGU__ACUAGUAUUCCGACCAGGCACGCAAUGGAAAUGGCCAGAAAAUGGCCAUAUGUGGCCAAGUCGGCUCCCACUGCUCAUUUUUCC (((((........)))))(((((..(((.((((......(((((((.....))))))).)))))))..))))).................... (-24.59 = -25.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:57 2006