Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,179,849 – 7,179,941 |
Length | 92 |
Max. P | 0.512543 |
Location | 7,179,849 – 7,179,941 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 98.70 |
Mean single sequence MFE | -20.62 |
Consensus MFE | -20.18 |
Energy contribution | -20.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.15 |
Structure conservation index | 0.98 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7179849 92 - 27905053 CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40) >DroSec_CAF1 20718 92 - 1 CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40) >DroSim_CAF1 20697 92 - 1 CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -21.40) >DroEre_CAF1 26033 92 - 1 CGAUAUGCACUUUGAAUGGAAAUAUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. ( -20.30) >DroYak_CAF1 21178 92 - 1 CGAUAUGCACGCUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((...(((..(((((..(((((....)))))...)))))..)))...)))...(((.....((((.......))))...))).. ( -18.60) >consensus CGAUAUGCACUUUGAAUGGAAAUGUUCUUGAAGUUAGGGUUAAUUUUUGUUCCAAGUGAAUGGCCAAAAGCUUUUUAAUUAAGCCCUGCCUU .......(((((.(((..(((((..(((((....)))))...)))))..))).)))))...(((.....((((.......))))...))).. (-20.18 = -20.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006