Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,175,074 – 7,175,173 |
Length | 99 |
Max. P | 0.576118 |
Location | 7,175,074 – 7,175,173 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -30.61 |
Consensus MFE | -21.64 |
Energy contribution | -23.48 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.19 |
Mean z-score | -1.63 |
Structure conservation index | 0.71 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.576118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7175074 99 - 27905053 GACAUCUAUUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACUACU ...((((((((.........((..(((((((((((...)))))))...(((.((....)).)))..))))..))........))))))))......... ( -30.33) >DroVir_CAF1 18087 78 - 1 GACAUUUACUGCACCUACAUGCUGCUGGGCGUGGCCAAACCACGCGGCUCCCGCC---AGACCACGUCGGAGACA------------------ACCACU (((.......(((.(.....).)))(((((((((.....))))))(((....)))---...))).)))(....).------------------...... ( -25.30) >DroSec_CAF1 15987 99 - 1 GACAUCUACUGCACGUACAUGCUUCUGGGCGUUGCCAAGCCGCGCUCCUCGAACCGCAGUAUGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU ...((((((((...(((...((((((((((((.((...)).))))...(((.((....)).)))..))))))))..)))...))))))))......... ( -30.80) >DroSim_CAF1 15969 99 - 1 GACAUCUACUGCACAUACAUGCUUCUGGGCGUUGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU ...((((((((.........((((((((((((.((...)).))))...(((.((....)).)))..))))))))........))))))))......... ( -30.33) >DroEre_CAF1 21221 99 - 1 GACAUCUACUGCACAUACAUGCUGCUGGGCGUGGCCAAGCCGCGCUCCUCGAGCCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACUUCU ...((((((((..(.(((.(((.((((((((((((...)))))))))....))).)))))).).....((........))..))))))))......... ( -33.10) >DroYak_CAF1 16295 99 - 1 GACAUCUACUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAGCCGCAGUGCGAAACCGGAGGCUAUACCAACAGUGGACUUGACUACU ....((((((((((......((((..(((((((((...))))))).))..))))....))))......(..((.....))..))))))).......... ( -33.80) >consensus GACAUCUACUGCACAUACAUGCUCCUGGGCGUGGCCAAGCCGCGCUCCUCGAACCGCAGUACGAAACCGGAGGCUAUACCAACAGUGGAUUUAACCACU ....(((((((.........(((.(((((((((((...)))))))...(((.((....)).)))..)))).)))........))))))).......... (-21.64 = -23.48 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006