Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,173,970 – 7,174,164 |
Length | 194 |
Max. P | 0.994217 |
Location | 7,173,970 – 7,174,090 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -40.08 |
Consensus MFE | -36.00 |
Energy contribution | -34.88 |
Covariance contribution | -1.12 |
Combinations/Pair | 1.30 |
Mean z-score | -1.96 |
Structure conservation index | 0.90 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7173970 120 + 27905053 AGAAGGGGGCGUGGCGGUAGUGGAUAUCGAUGUAUUGGGACCGGGAUCGUUCUCCUUGUCGGUCGUUUUGUUUGUGUUUGCUGCCGUCAUUUCUGGUAGGAUUAAUUUAUCUAAAUCCCA ....(((((.((((((((((..(((((.((((....(.((((((((......)))....))))).)..)))).)))))..)))))))))).)).....((((......))))....))). ( -41.60) >DroSec_CAF1 14891 120 + 1 AGAAGAAGGCGUGGCGGUAGUGGAUAUCGAUGUAUGGGGACCGGGAUCGUUCUCCUUGUCGGUCGUUUUGUCUGUGUUUGCUGCCGUCAUUUCUGGUAGGAUUAAUUUAUUUAAAUCCCA ......(((.((((((((((..(((((.((((...((.((((((((......)))....))))).)).)))).)))))..)))))))))).)))....(((((..........))))).. ( -41.40) >DroSim_CAF1 14861 120 + 1 AGAAGGGGGCGUGGCGGUAGUGGAUACCGAUGUAUGGGGACCGGGAUCGUUCUCCUUGUCGGUCGUUUUGUCUGUGUUUGCUGCCGUCAUUUCUGGUAGGAUUAAUUUAUCUAAAUCCCA ....(((((.((((((((((..(((((.((((...((.((((((((......)))....))))).)).)))).)))))..)))))))))).)).....((((......))))....))). ( -45.60) >DroEre_CAF1 20113 120 + 1 AGGAGGGGGCGUGGCGGUAGAGGGUUUCGAUGUAUGGGGAUGGGGAUCGUUCUCCUUGUCGGACGUUUUGUCAGUGUUUGCUACCGUCAUUUCUGGUAGGAUUAGUUUUUCUAAAUCUCA ..(((((((.((((((((((..((..(.((((.(((..((..((((......))))..))...)))..)))).)..))..)))))))))).)))..(((((.......)))))..)))). ( -35.50) >DroYak_CAF1 15185 120 + 1 AGGAGGGGACGUGGCUGUGGUGGACUUCGAUGUAUGGGGACCAGGAUCGUUCUCCUUGUCGGACGUUUUGUCUGUGUUUGCUACCGUCAUUUCUGGUAGGAUUAUUUUUUCUAAAUCUCA ..(((((((.(((((.((((..(((..(((((...(((((.(......).))))).)))))(((.....)))...)))..)))).))))).)))..(((((.......)))))..)))). ( -36.30) >consensus AGAAGGGGGCGUGGCGGUAGUGGAUAUCGAUGUAUGGGGACCGGGAUCGUUCUCCUUGUCGGUCGUUUUGUCUGUGUUUGCUGCCGUCAUUUCUGGUAGGAUUAAUUUAUCUAAAUCCCA ......(((.((((((((((..(((((.((((.(((..(((.((((......)))).)))...)))..)))).)))))..)))))))))).)))....(((((..........))))).. (-36.00 = -34.88 + -1.12)
Location | 7,174,050 – 7,174,164 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -24.10 |
Energy contribution | -23.78 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -1.39 |
Structure conservation index | 0.83 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7174050 114 - 27905053 CCGAGCAUUCUAACGAAAUUAAGUCA------AAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCUACCAGAAAUGACGGCAG ....((.(((....))).....((((------...(((((((((...(((((((.(((....))).)))))))..))))))))).....(((......)))..........)))).)).. ( -31.20) >DroSec_CAF1 14971 120 - 1 CCGAGCAUUCUAACGAUAUUAAGUCCAUCUACAAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAAAUAAAUUAAUCCUACCAGAAAUGACGGCAG ....((..((....))......(((..(((.......(((((((...(((((((.(((....))).)))))))..)))))))(((((..........)))))....)))...))).)).. ( -29.10) >DroSim_CAF1 14941 120 - 1 CCGAGCAUUCUAACGAUAUUAAGUCCAUCUACAGACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCUACCAGAAAUGACGGCAG (((..((((((......(((((....(((((.((.(((((((((...(((((((.(((....))).)))))))..))))))))).)))))))...)))))......)).)))).)))... ( -31.20) >DroEre_CAF1 20193 120 - 1 CCGAUCAUUCUAACAAGCUUAAGUCCAUCGGAAAAGUUGACAAAUCAGUUUGCCUUACAAGUGUGCGGCGAACGCUUUGCUGAGAUUUAGAAAAACUAAUCCUACCAGAAAUGACGGUAG (((.(((((((........((((((..((((.((((((((....)))(((((((.(((....))).)))))))))))).))))))))))((........)).....)).))))))))... ( -28.40) >DroYak_CAF1 15265 120 - 1 CCGAGCAUUCUAACGAACUUAAGUCCAUGGAAAAAGUCUACAAAUCAGUUUGCCUUACAAGUGUGCGGCGAACGCUUUGCUGAGAUUUAGAAAAAAUAAUCCUACCAGAAAUGACGGUAG (((((..(((....))))))..(((..(((...((((((.((((...(((((((.(((....))).)))))))..))))...)))))).((........))...))).....)))))... ( -25.10) >consensus CCGAGCAUUCUAACGAAAUUAAGUCCAUCGAAAAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCUACCAGAAAUGACGGCAG (((...............(((((((...........((((((((...(((((((.(((....))).)))))))..)))))))))))))))...............((....)).)))... (-24.10 = -23.78 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:49 2006