Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,172,490 – 7,172,610 |
Length | 120 |
Max. P | 0.819587 |
Location | 7,172,490 – 7,172,610 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -24.36 |
Energy contribution | -25.04 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -2.02 |
Structure conservation index | 0.66 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7172490 120 - 27905053 AAGGAGUCGGUUCACCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGACAAGCGCAUCACACCAAAUUCGGAGUCCCAUUACUCAGUCGC ..(((.((((....))..(((.(((((.....((((....))))(((((((....))))).............(((....))))).))))))))......)).))).............. ( -34.50) >DroSec_CAF1 13411 120 - 1 AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGAACAGCGCAUCACACAAAAUUCGGAGUCCCGUUACGCAGUCGC ..(((.(((((((((.((((((.((.......)))))))))))))))((((....))))(((((..............))))).................)).))).............. ( -38.04) >DroSim_CAF1 13381 120 - 1 AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGAACAGCGCAUCACACCAAAUUCGGAGUCCCUUUACGCAGUCCC ..(((.(((((((((.((((((.((.......)))))))))))))))((((....))))(((((..............))))).................)).))).............. ( -38.04) >DroEre_CAF1 18687 108 - 1 AAGU------------AGUGGAUGUGAAGCCAACUCUACUGAGUGCUCAACGAAAGUUGGUCGUCAACCAAAAGUUGGCCAGCACCGCACACCACAUUCGGAAUCCCGGUCCGCAGACCC ....------------.((((.((((......((((....))))(((((((....))))...((((((.....)))))).)))....))))))))....((....))((((....)))). ( -34.60) >DroYak_CAF1 13718 113 - 1 AAGGAGUCGCUGCCUCAGUGGAUGUGAAGCCAACUCUACUGAGUGCCCAACGAAGGUUGGCUGUAAACCAAAAGCUGACCAGCACCACACAGCACAUUCGGAAUCCCGA-------AUCC ..(((((.((((((((((((((.((.......))))))))))).))........(((..(((..........)))..)))..........))))).(((((....))))-------)))) ( -38.40) >consensus AAGGAGUCGGCGCUCCAGUGGAUGUGAAGACAACUCUACUGAGUGCCCAACGAAAGUUGGCUGUAAACCAAAAGCUGACCAGCGCAUCACACCAAAUUCGGAGUCCCGUUACGCAGUCCC ..(((.((.......(((((((.((.......))))))))).(((.(((((....))))).............(((....)))....)))..........)).))).............. (-24.36 = -25.04 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:47 2006