Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,169,276 – 7,169,372 |
Length | 96 |
Max. P | 0.813139 |
Location | 7,169,276 – 7,169,372 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -18.22 |
Consensus MFE | -13.80 |
Energy contribution | -14.20 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.48 |
Structure conservation index | 0.76 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.813139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7169276 96 - 27905053 CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA .....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90) >DroSec_CAF1 10193 96 - 1 CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA .....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90) >DroSim_CAF1 10168 96 - 1 CUACCCCGACCACUU---UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA .....((((......---..(((.......(((((.......))))).....))).........(((..((((((.....))))))..)))...)))). ( -17.90) >DroEre_CAF1 15475 97 - 1 CUACCCCGACCAC--UCGUACGAAACAAUCGUACCAUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA .............--..((((((.....))))))..................((((((......(((..((((((.....))))))..)))..)))))) ( -18.70) >DroYak_CAF1 10463 99 - 1 CUACCCCGACCACUCUCGUACGAAACAAUCGUACCAUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA .................((((((.....))))))..................((((((......(((..((((((.....))))))..)))..)))))) ( -18.70) >consensus CUACCCCGACCACUU___UAGGAAACAAUCGUAGCCUACCAUGCUAUACCAAUCCAAACUAACAUUCAGUCUGCUCAACUGGCAGAACGAAACUUUGGA ..............................(((((.......))))).....((((((......(((..((((((.....))))))..)))..)))))) (-13.80 = -14.20 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:45 2006