Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,153,826 – 7,153,928 |
Length | 102 |
Max. P | 0.960903 |
Location | 7,153,826 – 7,153,928 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 95.87 |
Mean single sequence MFE | -39.28 |
Consensus MFE | -33.20 |
Energy contribution | -33.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.85 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7153826 102 + 27905053 -CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG -(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90) >DroSec_CAF1 86763 102 + 1 -CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG -(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90) >DroSim_CAF1 99950 102 + 1 -CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG -(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90) >DroEre_CAF1 88355 102 + 1 -CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG -(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))----))))))....((((((..----...)))))) ( -40.90) >DroYak_CAF1 90326 102 + 1 -CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUUGCGCUGCAGCU----GCGACGUAGCCGCGGAAU----UUUUUUGCG -(((((((((.(((((........((......))((((((.((..(........)..)).)))))).))))).)))----))))))....((((((..----...)))))) ( -37.10) >DroAna_CAF1 95441 111 + 1 CCGUCGCAGUCGCAGCAAUUUUUUACGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGCCGCUGCCGCUGCCUGCGACGUAGCCGCGGAAUUCAUUUUUUUGCG .((((((((..(((((..........((....))...........((....((.((((...))))))....)))))))))))))))....(((((((.......))))))) ( -35.00) >consensus _CGUCGCAGUCGCAGCAAUUUUUUGCGCCAAAGCCAAACCAAAAAGGACGAGGACAAUUCGGUUGGCGCUGCAGCU____GCGACGUAGCCGCGGAAU____UUUUUUGCG .(((((((((.(((((.....((((...))))(((((.((.....)).((((.....)))).)))))))))).)))....))))))....(((((((.......))))))) (-33.20 = -33.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:43 2006