Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,147,161 – 7,147,259 |
Length | 98 |
Max. P | 0.757452 |
Location | 7,147,161 – 7,147,259 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 85.93 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -23.55 |
Energy contribution | -23.88 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.81 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7147161 98 + 27905053 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CA----AAAAAAAAA----AAGAAAGGAUAA (((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----.........----............ ( -29.30) >DroSec_CAF1 80100 102 + 1 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGCUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---AA----AAAAAAAAAAAAACAGAAAGGAUAA ((((.((..(((((((...(((((.....)))))------..)).)))))..)).)))).((.....))(((......)))---..----......................... ( -29.20) >DroSim_CAF1 91061 105 + 1 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGCCCAAA----AAAAAAAAAAAAACAGAAAGGAUAA (((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).)))....----......................... ( -28.40) >DroEre_CAF1 81733 93 + 1 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CC----GAAAAAAA---------AGGGAUAA (((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----........---------........ ( -28.40) >DroYak_CAF1 83489 92 + 1 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU------GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC---CC----GAAAAAAA---------A-GGAUAA (((.((.(((.(((.....(((((.....)))))------(((.(..(((((......)))))..)))))))))).)).))---).----........---------.-...... ( -28.40) >DroAna_CAF1 87186 103 + 1 GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUUGCUGUUGCUGCGGUGUUGCAACGUCAGCUGAAAGCGGCCCAAAUGGU---CCAGCAGAAAAAAA---------AAGAAAAG ((((.((..(((.((...(((((((((.....)))))))).)...)))))..)).)))).((((.....((((.....)))---))))).........---------........ ( -30.60) >consensus GGCGGUGUGGCGGCCAAUGAACAGUAAAACUGUU______GCUGCGGUGUUGCAACGUCAGCAGAGAGCGCCCCAAAUGGC___CA____AAAAAAAA_________AAGGAUAA ((.(((((.(((((.....(((((.....)))))......)))))..(((((......)))))....)))))))......................................... (-23.55 = -23.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:38 2006