Locus 2661

Sequence ID 3R_DroMel_CAF1
Location 7,146,157 – 7,146,249
Length 92
Max. P 0.598608
window4321

overview

Window 1

Location 7,146,157 – 7,146,249
Length 92
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.10
Mean single sequence MFE -31.73
Consensus MFE -22.36
Energy contribution -22.73
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -2.18
Structure conservation index 0.70
SVM decision value 0.13
SVM RNA-class probability 0.598608
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7146157 92 - 27905053
UACUUAUAU----GCGUAAACGCACGUGUGUGAGUGUAUGCGAAUGCCGGUUAAUGAA--------CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((----((((......)))))))))))))....(...((((.(((....))--------).((.(((((((....)))))))..))))))..).... ( -30.80)
>DroVir_CAF1 107274 93 - 1
UGCUUAUAUAUGUGUGUGUGUGCUU----GCGCUUAUGUACAUGUGCCGGUUAAUGAAGCAACCGGUACGCACCCCAUUGGAAUGGGGUCACGGUUU-------
.((......(((((..((.(((...----.))).))..)))))(((((((((........)))))))))))(((((((....)))))))........------- ( -35.60)
>DroSec_CAF1 79103 92 - 1
UACUUAUAU----GCGUAAACGCACGUGUGUGAGUGUAUGCGAAUGCCGGUUAAUGAA--------CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((----((((......)))))))))))))....(...((((.(((....))--------).((.(((((((....)))))))..))))))..).... ( -30.80)
>DroSim_CAF1 90064 92 - 1
UACUUAUAU----GCGUAAACGCACGUGUGUGAGUGUAUGCGAAUGCCGGUUAAUGAA--------CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((----((((......)))))))))))))....(...((((.(((....))--------).((.(((((((....)))))))..))))))..).... ( -30.80)
>DroEre_CAF1 80739 92 - 1
UACUUAUAU----GCGUAAACGCACGUGUGUGAGUAUAUGCGAAUGCCGGUUAAUGAA--------CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((----((((......)))))))))))))....(...((((.(((....))--------).((.(((((((....)))))))..))))))..).... ( -31.10)
>DroYak_CAF1 82508 92 - 1
UACUUAUAU----GCGUAAACGCACGUGUGUGAGUAAAUGCGAAUGCCGGUUAAUGAA--------CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((----((((......)))))))))))))....(...((((.(((....))--------).((.(((((((....)))))))..))))))..).... ( -31.30)
>consensus
UACUUAUAU____GCGUAAACGCACGUGUGUGAGUAUAUGCGAAUGCCGGUUAAUGAA________CACGCACCCCAUUGGAAUGGGGUCACGGGCAGAGGUUG
(((((((((....(((....)))....)))))))))........((((.((..................(.(((((((....)))))))))).))))....... (-22.36 = -22.73 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:36 2006