Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,144,993 – 7,145,093 |
Length | 100 |
Max. P | 0.590250 |
Location | 7,144,993 – 7,145,093 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -21.00 |
Consensus MFE | -8.47 |
Energy contribution | -9.30 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 0.40 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7144993 100 + 27905053 AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--C-CCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUACUUUUGCAUACUCCGCCAUUGUC ...........(((((((((..((((((((((.....--.-.....--........)))----)))))))..----....((.............))......)).))))))) ( -22.13) >DroSec_CAF1 77973 100 + 1 AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CACCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUACUUUU-CAUACUCCGCCAUUGUC ...........(((((((((..((((((((((.....--.......--........)))----)))))))..----....(.....)........-.......)).))))))) ( -18.35) >DroSim_CAF1 88932 100 + 1 AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CACCCCA--CAAGAUCCCCC----GGAAACUAU----UCCCGCUUUUCAUAGUUUU-CAUUCUCCGCCAUUGUC ...........(((((((((..((((((((((.....--.......--........)))----)))))))..----....(((......)))...-.......)).))))))) ( -21.35) >DroEre_CAF1 79708 91 + 1 AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA--CUCCCCA--CAAGAUCCCCC----GGAAACUAU----UCUCGGUAUUC----------AUAUACCGCCAUUGUC ...........(((((((((((((((((((((.....--((.....--..))....)))----))))))).)----))..(((((..----------..)))))).))))))) ( -26.20) >DroYak_CAF1 81389 95 + 1 AUCUUAACGAUGACAAUGCAAAAGUUUUCGGGCACUA--CUUCCCU--CAAGAUCCCCC----GGAAACUAUGUAGUCUCGGUAUUC----------AUACACCGCCAUUGUC ...........((((((((...((((((((((.....--(((....--.)))....)))----)))))))..........(((....----------....)))).))))))) ( -23.00) >DroAna_CAF1 85078 101 + 1 AUCUUAACGAUGACAAUGCGAAAGUUUUCAUCCUUCAUAUUCCCCAUCCCAGCUUCUCCUGUCGCUAACUAU----CGCUAGUGUCC----UU----CUGAGCCACCAUUGUC ........(((((....((....))..)))))...................((((.....(.(((((.....----...))))).).----..----..)))).......... ( -15.00) >consensus AUCUUAACGAUGACAAUGCGAAAGUUUUCGGGCACUA__CUCCCCA__CAAGAUCCCCC____GGAAACUAU____UCCCGCUUUUC____UU____AUACUCCGCCAUUGUC ...........(((((((((.........(((..........)))..................(....)..................................)).))))))) ( -8.47 = -9.30 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:35 2006