Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,047,498 – 1,047,698 |
Length | 200 |
Max. P | 0.598938 |
Location | 1,047,498 – 1,047,618 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -26.51 |
Energy contribution | -28.07 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.62 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1047498 120 + 27905053 CAAACAGCCAAGUAAGGUGAUUAAAAGAGAGCCGCUGGGAGGGAGAAGUGCGAUUCUGGACAUUACUUGUUGGCCAGAAUCUCAAACUUGAUGCCGUGGUCGUGCUUCUCCAACUCGCUA .....(((.......(((..((....))..)))...(((..(((((((..((((..(((.(((((....((((........))))...))))))))..))))..)))))))..)))))). ( -40.70) >DroSec_CAF1 19420 120 + 1 CAAACAGCCAAGAAAGGUGAUUAAAAGAGAGCCGCUGAGAGGGAGAAGUGCGAUUCUGGACCUCACUUGUUGGCCAGAAUCUCAAACUUCAUGCCGUGAUCGUGCUUCUCCAACUCGCUA .....(((..((...(((..((....))..))).))(((..(((((((..(((((((((.((.........)))))))))).......((((...))))..)..)))))))..)))))). ( -42.10) >DroSim_CAF1 19291 120 + 1 CAAACAGCCAAGAAAGGUGAUUAAAAGAGAGCCGCUGGGAGGGAGAAGUGCGAUUCUGGACCUCACUUGUUGGCCAGAAUCUCAAACUUCAUGCCGUGAUCGUGCUUCUCCAACUCGCUA .....(((..((...(((..((....))..))).))(((..(((((((..(((((((((.((.........)))))))))).......((((...))))..)..)))))))..)))))). ( -41.20) >DroEre_CAF1 19577 112 + 1 ----CAGCCAAGAAAAUCGAUUAAAAGAGAGCCAUUGU----GUGAAGGUGUGUUCUGGAAUUCACUUGUUGGCCAGAAUCUCAAACUUGAUGCCGUGGUCGUGCUUCUCCAACUCGCUA ----.(((...(.....)........(((((((((.((----((.(((.((.(((((((....(....)....)))))))..))..))).)))).)))))......))))......))). ( -24.00) >consensus CAAACAGCCAAGAAAGGUGAUUAAAAGAGAGCCGCUGGGAGGGAGAAGUGCGAUUCUGGACCUCACUUGUUGGCCAGAAUCUCAAACUUCAUGCCGUGAUCGUGCUUCUCCAACUCGCUA .....(((.......(((..((....))..)))...(((..((((((((((((((((((....(....)....))))))))(((..(.....)...)))..))))))))))..)))))). (-26.51 = -28.07 + 1.56)
Location | 1,047,578 – 1,047,698 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -41.99 |
Consensus MFE | -37.96 |
Energy contribution | -37.40 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.14 |
Structure conservation index | 0.90 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1047578 120 - 27905053 AUUCUUCGUGAGUCGGACAAGAUGCCCAGCACAGGCGGAGUGCUGCCUCCAGCUGCCGCCUUCUCUAAGACCGGACUAAUUAGCGAGUUGGAGAAGCACGACCACGGCAUCAAGUUUGAG ......(....)((((((..((((((..((....))((.(((((..((((((((((.......(((......))).......)).)))))))).)))))..))..))))))..)))))). ( -42.34) >DroSec_CAF1 19500 120 - 1 AUUCUUCGUGAGUCGGACAAGAUGCCCAGCACAGGCGGAGUGCUGCCUCCAGCUGCCGCCUUCUCUAAGACCGGCCUCAUUAGCGAGUUGGAGAAGCACGAUCACGGCAUGAAGUUUGAG ...((((((..(((((((....((((.......))))..(((((..((((((((((((.(((....)))..))))..........)))))))).)))))).)).))))))))))...... ( -37.80) >DroSim_CAF1 19371 120 - 1 AUUCUUCGUGAGUCGGACAAGAUGCCCAGCACAGGCGGAGUGCUGCCUCCAGCUGGCGCCUUCUCUAAGACCGGCCUCAUUAGCGAGUUGGAGAAGCACGAUCACGGCAUGAAGUUUGAG ...((((((..(((((((....((((.......))))..(((((..((((((((.(((((.((.....))..))).......)).)))))))).)))))).)).))))))))))...... ( -40.91) >DroEre_CAF1 19649 120 - 1 AUUCUUCGUGAGUCAGACAAGAUGCCCAGCACAGGCGGAGUGCUGACUCCAGCUGCCGCCUUUUCUAAGACGGGCCUAAUUAGCGAGUUGGAGAAGCACGACCACGGCAUCAAGUUUGAG ......(....)((((((..((((((..((....))((.(((((..((((((((.(((.(((....))).)))((.......)).)))))))).)))))..))..))))))..)))))). ( -46.40) >DroYak_CAF1 20408 120 - 1 AUUCUUCGUGAGUCAGACAAGAUGCCUAGCACAGGCGGAGUGCUGACUCCAGCUGCUGCCUUUUCUAAGACCGGCCUAAUUAGCGAGUUGGAGAAGCAUGACCACGGUAUCAAGUUUGAG ......(....)((((((..((((((..((....))((.(((((..((((((((((((((............)))......))).)))))))).)))))..))..))))))..)))))). ( -42.50) >consensus AUUCUUCGUGAGUCGGACAAGAUGCCCAGCACAGGCGGAGUGCUGCCUCCAGCUGCCGCCUUCUCUAAGACCGGCCUAAUUAGCGAGUUGGAGAAGCACGACCACGGCAUCAAGUUUGAG ......(....)((((((..((((((..((....))((.(((((..((((((((..(((.......................))))))))))).)))))..))..))))))..)))))). (-37.96 = -37.40 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:03 2006