Locus 2658

Sequence ID 3R_DroMel_CAF1
Location 7,141,227 – 7,141,317
Length 90
Max. P 0.589385
window4317

overview

Window 7

Location 7,141,227 – 7,141,317
Length 90
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 83.09
Mean single sequence MFE -26.26
Consensus MFE -18.01
Energy contribution -18.10
Covariance contribution 0.09
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.589385
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7141227 90 - 27905053
UCCCGUCUGCAUCUGGCUAAUUGACAAUUGGCCAC--CGCCGCACGCACUUAA--CGC--------GGCAAAGACUCGCUGCC---------AAAAUUGCAAAAUCGCGGC
....((((.....((((((((.....)))))))).--.(((((..........--.))--------)))..))))..(((((.---------..............))))) ( -26.76)
>DroSec_CAF1 74263 90 - 1
UCCCGUCUGCAUCUGGCUAAUUGACAAUUGGCCAC--CGCCGCACGCACUUAA--CGC--------GGCAAAGACUCGCUGCC---------AAAAUCGCAAAAUCGCGGC
....((((.....((((((((.....)))))))).--.(((((..........--.))--------)))..))))..(((((.---------..............))))) ( -26.76)
>DroSim_CAF1 85210 90 - 1
UCCCGUCUGCAUCUGGCUAAUUGACAAUUGGCCAC--CGCCGCACGCACUUAA--CGC--------GGCAAAGACUCGCUGCC---------AAAAUCGCAAAAUCGCGGC
....((((.....((((((((.....)))))))).--.(((((..........--.))--------)))..))))..(((((.---------..............))))) ( -26.76)
>DroEre_CAF1 75495 89 - 1
UCCCGUCUGCAUC-GGCUAAUUGACAAUUGGCCAC--CGCCGCACGCACUUAA--CGC--------GGCAAAGACUCGCUGCC---------AAAAUCACAAAAUCGCAGC
....((((.....-(((((((.....)))))))..--.(((((..........--.))--------)))..))))..(((((.---------..............))))) ( -27.26)
>DroYak_CAF1 77506 99 - 1
UCCUGUCUGCAUCUGGCUAAUUGACAAUUGGCCAA--CGCCGCACGCACUUAA--CGC--------GGCAAAGAAUCGCUGCCCAAAAUCGCAAAAUCACAAAAUCGCGGC
......((((.((((((((((.....)))))))..--.(((((..........--.))--------)))..))).....(((........))).............)))). ( -24.60)
>DroAna_CAF1 81839 91 - 1
UCCUGA---AACGUGGCUAAUUGACAAUUGGCCGCAGCACUGUACGCACUUAAAACGCGCGCCAAAGGCAAAGAAUCGUUGCC---------AA--------AAUCGCGGC
.((...---...(((((((((.....))))))))).((...(..(((.........)))..)....(((((.......)))))---------..--------....)))). ( -25.40)
>consensus
UCCCGUCUGCAUCUGGCUAAUUGACAAUUGGCCAC__CGCCGCACGCACUUAA__CGC________GGCAAAGACUCGCUGCC_________AAAAUCGCAAAAUCGCGGC
..............(((((((.....))))))).....(((((..((.........))........((((.........)))).......................))))) (-18.01 = -18.10 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:32 2006