Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,140,649 – 7,140,778 |
Length | 129 |
Max. P | 0.948517 |
Location | 7,140,649 – 7,140,746 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -33.01 |
Consensus MFE | -17.09 |
Energy contribution | -16.98 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -2.44 |
Structure conservation index | 0.52 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7140649 97 + 27905053 CGCCUUGGGGCAGCUGAAUGCAUUUUUGGUCAGCUGC------AGUUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUU-GG-------CAGUU--------- (((......((((((((...((....)).))))))))------.....)))((((.((.........(((((((.....))))))).........)-).-------)))).--------- ( -35.07) >DroVir_CAF1 100121 99 + 1 CGCCUUGGG--CGCCGAGUGCAUUUUUGGUCAGUUGC------AGUUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUAGCCUGUA-CCCAGCAGCCA------------ .......((--(((.(.(((((......(((((((((------.....)))))))))..........(((((((.....)))))))......))))-).).)).))).------------ ( -37.60) >DroGri_CAF1 89146 92 + 1 CGCCUUGGG--UGCCCAGUGCAUUUUUGGUCAGUUGC------AGCUCGCGACUGGCAUUUUUUCUCGUUGCACUUUAAGUGCAGUUUACCUCUUU-GC-------CA------------ .((.((((.--...)))).)).......(((((((((------.....)))))))))...........((((((.....))))))...........-..-------..------------ ( -28.50) >DroYak_CAF1 76918 97 + 1 CGCCUUGGGGCGGCUGAAUGCAUUUUUGGUCAGCUGC------AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUU-GG-------CAGUU--------- (((...(..((((((((...((....)).))))))))------..)..)))((((.((.........(((((((.....))))))).........)-).-------)))).--------- ( -34.77) >DroMoj_CAF1 91449 92 + 1 UGCCUUGGG--UGCCCAGUGCAUUUUUGGUCAGCUGC------AGAUCGCGAUUGCAAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUU-GC-------CA------------ .((...(((--((.....((((.((.(((((......------.))))).)).))))..........(((((((.....))))))).)))))....-))-------..------------ ( -24.20) >DroAna_CAF1 81267 111 + 1 CGCCUUGGG--UGCUGAAUGCAUUUUCGGUGAGCUGCUGCACCAACUCGCGACGGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUUGC-------CAGUUGCAUGAAUG ((((..(((--(((.....))))))..)))).((....))........(((((.((((.........(((((((.....)))))))..........)))-------).)))))....... ( -37.91) >consensus CGCCUUGGG__UGCCGAAUGCAUUUUUGGUCAGCUGC______AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUU_GC_______CA____________ .((.((.((....)).)).)).......(((((.(((...........))).)))))..........(((((((.....))))))).................................. (-17.09 = -16.98 + -0.11)
Location | 7,140,686 – 7,140,778 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -16.26 |
Energy contribution | -18.29 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.06 |
Mean z-score | -2.69 |
Structure conservation index | 0.68 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7140686 92 + 27905053 AGUUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGGCAGUUGUGUAUGUUUGCUAUGCACCCUACCACGCCCC .....(((((((.((.........(((((((.....))))))).........)).)))).(((((((.....))))))).......)))... ( -26.57) >DroGri_CAF1 89181 72 + 1 AGCUCGCGACUGGCAUUUUUUCUCGUUGCACUUUAAGUGCAGUUUACCUCUUUGCCA--------UAUUUG-----------GUU-UGCCCU .((..((.(.(((((..........((((((.....))))))..........)))))--------....).-----------)).-.))... ( -15.45) >DroSec_CAF1 73725 92 + 1 AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGGCAGUUGUGCAUGUUUGCUUUGCCUCCUGCCACGCCCC .....(((..(((((.........(((((((.....)))))))..........(((((....(((....))).)))))...))))))))... ( -29.50) >DroSim_CAF1 84671 92 + 1 AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGGCAGUUGUGCAUGUUUGCUUUGCACCCUGCCACGCCCC ...........(((..........(((((((.....))))))).........((((((..(((((.........))))).)))))).))).. ( -30.80) >DroEre_CAF1 74960 86 + 1 AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGGCAGUUGUGUAUGUUUGCUUUCCACCCCGCC-----C- (((.((((((((.((.........(((((((.....))))))).........)).))))))))...)))................-----.- ( -25.27) >DroMoj_CAF1 91484 81 + 1 AGAUCGCGAUUGCAAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGCCA--------UGUUUG---UGCCCUCAGUUCCCCCCC .((.(((((..((((.........(((((((.....)))))))........))))..--------...)))---))...))........... ( -16.43) >consensus AGCUCGCGACUGGCAUUUUUUCUCGCUGCACUUUAAGUGCAGUUUACCUCUUUGGCAGUUGUG_AUGUUUGCUUUGCACCCUGCCACGCCCC ....((((((((.((.........(((((((.....))))))).........)).))))))))............................. (-16.26 = -18.29 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:30 2006