Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,139,173 – 7,139,270 |
Length | 97 |
Max. P | 0.621023 |
Location | 7,139,173 – 7,139,270 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 97.25 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -22.38 |
Energy contribution | -22.77 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.04 |
Mean z-score | -0.85 |
Structure conservation index | 0.95 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7139173 97 + 27905053 UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20) >DroSec_CAF1 72270 97 + 1 UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20) >DroSim_CAF1 83224 97 + 1 UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAACUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.((..((((...(((.....)))...))))..)).)).........((((.((.....))))))))))))))..... ( -23.10) >DroEre_CAF1 73361 97 + 1 UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUGGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -24.80) >DroYak_CAF1 75352 97 + 1 UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... ( -25.20) >DroAna_CAF1 79631 97 + 1 UUGUUUUAUGCGAUUAAUCCCCGGCUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGAUGCACAAAUUGCCAACAUUAAUUGAUUCC ((((..(((.(((.....((.(((.((((...(((.....)))...)))).))).))......))).))).))))...................... ( -18.10) >consensus UUGUUUUAUGCGAUUAAUCCACGACUAUGGAAGCCACUUUGGCGCACAUAAUUGAGGUUACGUUCGGCUGCGCAAAUUGCCAGCAUUAAUUGAUUCU ..........((((((((((.(((.((((...(((.....)))...)))).))).)).........((((.((.....))))))))))))))..... (-22.38 = -22.77 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:28 2006