Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,138,851 – 7,138,956 |
Length | 105 |
Max. P | 0.999553 |
Location | 7,138,851 – 7,138,956 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 93.82 |
Mean single sequence MFE | -16.38 |
Consensus MFE | -15.32 |
Energy contribution | -15.32 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.18 |
Structure conservation index | 0.94 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7138851 105 - 27905053 AAAAAAAAAACUGCAUAAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCGUUGAUCAAUAAA ........(((.((((...........((.((((((....)))))).))............(..((((((.........))))))..)))))))).......... ( -18.10) >DroSec_CAF1 71948 100 - 1 AA-AAA----AUGUAUGAAAAGAAAAGGAAAAAUUGCAAACAAUUUGCCAAUAAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUAUGAAUGCAUUGAUCAAUAAA ..-..(----((((((..........((..((((((....)))))).))................(((((.........)))))....))))))).......... ( -13.70) >DroSim_CAF1 82901 101 - 1 AAAAAA----AUGUAUGAAAAGAAAAGGAAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUAUGAAUGCAUUGAUCAAUAAA .....(----((((((..........((..((((((....)))))).))................(((((.........)))))....))))))).......... ( -13.70) >DroEre_CAF1 73037 102 - 1 -AAAAA--AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA -.....--...(((((...........((.((((((....)))))).))............(..((((((.........))))))..))))))............ ( -18.20) >DroYak_CAF1 75016 103 - 1 AAAAAA--AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA ......--...(((((...........((.((((((....)))))).))............(..((((((.........))))))..))))))............ ( -18.20) >consensus AAAAAA__AACUGCAUGAAAAGAAAAGGGAAAAUUGCAAACAAUUUGCCAAUGAAAAUCAAUUGAGCCGGCAAAGGGAACUGGUUUGAAUGCAUUGAUCAAUAAA ...........(((((..........((..((((((....)))))).))............(((((((((.........))))))))))))))............ (-15.32 = -15.32 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:27 2006