Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,136,166 – 7,136,258 |
Length | 92 |
Max. P | 0.528225 |
Location | 7,136,166 – 7,136,258 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.55 |
Mean single sequence MFE | -22.91 |
Consensus MFE | -15.32 |
Energy contribution | -14.88 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.04 |
Structure conservation index | 0.67 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7136166 92 - 27905053 --C--G----AACUCCGGCU--------------------CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAACUAGUCGACUAAGGACAUUUGCU --.--.----......(((.--------------------........(((((((((((...))))))))))).((((.((((((..((....))....)))))).)))).......))) ( -19.40) >DroVir_CAF1 93548 91 - 1 GAC--G----GCCUCAGAGU--------------------CCAGU---UUUAUGUUCAUUAUGUGUACAUGGAGCUUAUUUGAUUUCUGCAUGUAAAUUAGUCGACUGAGGCCAUUUGUU ...--(----(((((((...--------------------..(((---(((((((.(((...))).))))))))))...((((((..(........)..))))))))))))))....... ( -28.70) >DroSec_CAF1 68914 89 - 1 --C--G----AACUCCGGCU--------------------CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCG---AAGGACAUUUGCU --.--(----((.((.(...--------------------.)......(((((((((((...)))))))))))........)).))).....((((((..(((.---...))))))))). ( -21.50) >DroSim_CAF1 77239 92 - 1 --C--G----AACUCCGGCU--------------------CCAACUAGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGCU --(--(----((.(((....--------------------...((((((.(((((((((...))))))((((((............))))))))).)))))).......)))..)))).. ( -19.44) >DroMoj_CAF1 85421 104 - 1 GGUCCGGGAGCUCGCUGAGC--------------UCGCUGCCAGU-U-UUUAUGUUCAUUAUGUGAACAUGGAGCUUAUUUGAUUUCUGCAUGUAAAUUACUCGACUGAGGCUAUUUGUU (((((((((((((((((.((--------------.....))))))-.-..(((((((((...)))))))))))))))...(((((((.....).)))))).....))).))))....... ( -29.30) >DroAna_CAF1 76633 112 - 1 --C--A----ACUUCUGGCUUCCAACUUCCCAACCAACUACCGACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGUU --.--.----.....(((...))).........((......(((((....(((((((((...))))))((((((............)))))))))....))))).....))......... ( -19.10) >consensus __C__G____AACUCCGGCU____________________CCAACUUGUGUGUGUUCAUUAUGUGAACAUGCAGCUUAUUUGAUUUCUGCAUGCAAAUUAGUCGACUAAGGACAUUUGCU ................................................(((((((((((...))))))))))).((((.((((((..((....))....)))))).)))).......... (-15.32 = -14.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006