Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,135,434 – 7,135,537 |
Length | 103 |
Max. P | 0.954418 |
Location | 7,135,434 – 7,135,537 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.12 |
Mean single sequence MFE | -29.95 |
Consensus MFE | -23.26 |
Energy contribution | -22.14 |
Covariance contribution | -1.12 |
Combinations/Pair | 1.31 |
Mean z-score | -1.82 |
Structure conservation index | 0.78 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7135434 103 - 27905053 CUG--------CUUAUUCUUUUAAUUUAAGUAAAU------UGUAUUGUCAUUUAGGCCCUUAGUUUUCUUGCAGUGUUCGAACUGCGAGGACCACGAGUUUUUAGAGUGGGCAAAG .((--------((((((((...(((((.....(((------((....(((.....)))...)))))((((((((((......))))))))))....)))))...))))))))))... ( -28.70) >DroSec_CAF1 68182 103 - 1 CUG--------CUUAUUCUUUUAAUUUAAGCGAAG------UGUAUUGUCAUUAAUGCCCUUAGUUUUCUUACAGUGUUCGAACUGCGGGGACUACGAGUUUUUAGAGUGGGCAAAC .((--------((((((((...(((((.(((.(((------.((((((....)))))).))).)))((((..((((......))))..))))....)))))...))))))))))... ( -28.90) >DroSim_CAF1 75799 109 - 1 CUG--------CUUAUUCUUUUAAUUUAAGUGAUGAUGUGAUGUAUUUUUAUGAAUGCCCUUAGUUUUCUUACAGUGUUUGAACUGCGAGGACCACGAGUUUUUAGAGUGGGCAAAG .((--------((((((((...(((((..(((..........((((((....))))))........((((..((((......))))..)))).))))))))...))))))))))... ( -27.20) >DroEre_CAF1 69758 111 - 1 CUGAAUAUUCCUCUGUUCUUCUGAUUUAAGAAAAG------UGUAUUGGCCCUAGUGCUCUCAGUUUUCUUGCAGUGUACGAGCUGCGAGGACAGCGAAUUUUUAGAGCGGGCGAAG .......(((.((((((((...(((((......((------.((((((....)))))).))..(((((((((((((......)))))))))).))))))))...)))))))).))). ( -33.40) >DroYak_CAF1 71693 108 - 1 CCGAAUAUGUCUCUGUUCUUCUGAUUUAAG---AG------UGUAUUGCCGCUUAAGCCCUUAGUUUUCUUGCAGUGUACGAGCUGCGAGGACAACGAAUUUUUAGAGCGGGCGAAG .((((((((.((((..((....))....))---))------)))))).((((((.........(((((((((((((......)))))))))).))).........)))))).))... ( -31.57) >consensus CUG________CUUAUUCUUUUAAUUUAAGUAAAG______UGUAUUGUCAUUAAUGCCCUUAGUUUUCUUGCAGUGUUCGAACUGCGAGGACAACGAGUUUUUAGAGUGGGCAAAG ...........((((((((...(((((...............((((((....))))))........((((((((((......))))))))))....)))))...))))))))..... (-23.26 = -22.14 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:25 2006