Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,132,946 – 7,133,040 |
Length | 94 |
Max. P | 0.993958 |
Location | 7,132,946 – 7,133,040 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -22.68 |
Energy contribution | -22.68 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.76 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7132946 94 + 27905053 UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGAAUCGCCCGCCACCAAAUGAAGCGGGCCAGGACGAAGC-AAAGGGGUUAGCCAA ....((((((((((((((.........)).))))...........((((((...........))))))...........-...)))))))).... ( -31.90) >DroSec_CAF1 65807 90 + 1 UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGAAUCG----CCACCAAAUGAAGCGGGCCAGGACGAAAC-AAAGGGGUUAGCCAA .(((((...(((((((((.......(((((..((.....))..).)----))).........)).))))))).......-...)))))....... ( -27.21) >DroSim_CAF1 73422 90 + 1 UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGAAUCG----CCACCAAAUGAAGCGGGCCAGGACGAAAC-AAAGGGGUUAGCCAA .(((((...(((((((((.......(((((..((.....))..).)----))).........)).))))))).......-...)))))....... ( -27.21) >DroEre_CAF1 67382 90 + 1 UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGCAUCG----CCACCAAAUGAUGCGGGGCAGGACGAAAC-AAAGGGGUUAGCCAA ....((((((((..((((((.....((((..(((.....)))...)----))).......))))))(......).....-...)))))))).... ( -30.60) >DroYak_CAF1 69267 91 + 1 UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGCAUCG----CCACCAAACGAAGCGGGGCAGGACGAAACCGAAGGGGUUAGUCAA (((((((....(((((((.........)).)))))....(((...)----))...........))))))).(((....((....))....))).. ( -32.80) >consensus UGCCCUGACCCUGGCCGCAUAAAAAUGGCAGGCCAUCAAGGAAUCG____CCACCAAAUGAAGCGGGCCAGGACGAAAC_AAAGGGGUUAGCCAA ....((((((((((((((.........)).)))).........(((.......((.........)).......))).......)))))))).... (-22.68 = -22.68 + -0.00)
Location | 7,132,946 – 7,133,040 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -37.36 |
Consensus MFE | -29.92 |
Energy contribution | -30.16 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -3.12 |
Structure conservation index | 0.80 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7132946 94 - 27905053 UUGGCUAACCCCUUU-GCUUCGUCCUGGCCCGCUUCAUUUGGUGGCGGGCGAUUCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA ..(((..........-)))..(((((((((((((.(((..((((((((((.(((....))).))))))))))...))).)))..)))))))))). ( -46.10) >DroSec_CAF1 65807 90 - 1 UUGGCUAACCCCUUU-GUUUCGUCCUGGCCCGCUUCAUUUGGUGG----CGAUUCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA ...............-.....(((((((((((((.(((..(((((----((...((.....))..)))))))...))).)))..)))))))))). ( -35.40) >DroSim_CAF1 73422 90 - 1 UUGGCUAACCCCUUU-GUUUCGUCCUGGCCCGCUUCAUUUGGUGG----CGAUUCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA ...............-.....(((((((((((((.(((..(((((----((...((.....))..)))))))...))).)))..)))))))))). ( -35.40) >DroEre_CAF1 67382 90 - 1 UUGGCUAACCCCUUU-GUUUCGUCCUGCCCCGCAUCAUUUGGUGG----CGAUGCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA ...............-.....((((((((((((((.....(((((----((..(((.....))).)))))))...)))))....))).)))))). ( -33.30) >DroYak_CAF1 69267 91 - 1 UUGACUAACCCCUUCGGUUUCGUCCUGCCCCGCUUCGUUUGGUGG----CGAUGCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA ..((..((((.....))))))(((((((((.(((.(((..(((((----((..(((.....))).)))))))...))).)))..))).)))))). ( -36.60) >consensus UUGGCUAACCCCUUU_GUUUCGUCCUGGCCCGCUUCAUUUGGUGG____CGAUUCCUUGAUGGCCUGCCAUUUUUAUGCGGCCAGGGUCAGGGCA .....................((((((((((...(((...((............)).)))(((((.((.((....))))))))))))))))))). (-29.92 = -30.16 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:22 2006