Locus 2648

Sequence ID 3R_DroMel_CAF1
Location 7,130,769 – 7,130,873
Length 104
Max. P 0.944410
window4305

overview

Window 5

Location 7,130,769 – 7,130,873
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 96.87
Mean single sequence MFE -26.26
Consensus MFE -22.28
Energy contribution -22.50
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -2.36
Structure conservation index 0.85
SVM decision value 1.34
SVM RNA-class probability 0.944410
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7130769 104 + 27905053
UUUUUUCGCGCGACUUUUGUGCGGGGGUCGGGAUUUGUAUU-UUUUGCAUGCAGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...((((((.((((((((....))))))))(((..((((((-(((((...((((((.............)))))))))))))))))..))).))))))....... ( -28.12)
>DroSec_CAF1 63635 104 + 1
UUUUUUCGCGCGACUUUUGUGCGGGGGUCGGGAUUUGUAUU-UUUUGCAUGCAGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...((((((.((((((((....))))))))(((..((((((-(((((...((((((.............)))))))))))))))))..))).))))))....... ( -28.12)
>DroSim_CAF1 71257 104 + 1
UUUUUUCGCGCGACUUUUGUGCGGGGGUCGGGAUUUGUAUU-UUUUGCAUGCAGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...((((((.((((((((....))))))))(((..((((((-(((((...((((((.............)))))))))))))))))..))).))))))....... ( -28.12)
>DroEre_CAF1 65168 104 + 1
UUUUUUCGCGCGACUUUUGUGCGGGGGUCGGGGUUUGUUUU-UUUUGCAUGCAGCCAUUUGUUUGUUUUGGCUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...((((((.((((((((....))))))))((((.((((((-((......(((((((...........))))))).)))))))).))))...))))))....... ( -28.30)
>DroYak_CAF1 67006 104 + 1
UUUUUUCGCGCGACUUUUGUGCGGGGCUCGGGAUUUGUAUU-UUUUGCAUGCAGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...(..(((((((...)))))))..).(((.((..((((((-(((((...((((((.............)))))))))))))))))....)).)))......... ( -26.22)
>DroAna_CAF1 71456 105 + 1
UUUUUUCGCGCGACUUUUGUGGGGGGUUCGGGAUUUGUAUUUUUUUGCAUGCUGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGUGAAAUUUACGA
...(((((((((((((..(..((.((....((...((((......)))).....))..)).))..)..)))))))..(((((.....)))))))))))....... ( -18.70)
>consensus
UUUUUUCGCGCGACUUUUGUGCGGGGGUCGGGAUUUGUAUU_UUUUGCAUGCAGCCAUUUGUUUGUUUGGGUUGUUAGAAAAUAUAUUUUUUGCGAAAUUUACGA
...(..(((((((...)))))))..)........(((((...((((((..((((((.............))))))..(((((.....)))))))))))..))))) (-22.28 = -22.50 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:20 2006