Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,130,359 – 7,130,457 |
Length | 98 |
Max. P | 0.973155 |
Location | 7,130,359 – 7,130,457 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 87.94 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -18.30 |
Energy contribution | -18.58 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -2.76 |
Structure conservation index | 0.75 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7130359 98 - 27905053 GAUUGUUUUUCGAUUCUAGUCGGAAGAUAAAG---AAAGGACUGUGAAAUGAAAUUAGAUG-GGGACAUGAAGUGCAUUGAUCUGAUAGGAUUAGACUUUCA- ..((((((((((((....)))))))))))).(---((((........((((...((..(((-....))).))...))))(((((....)))))...))))).- ( -24.30) >DroSec_CAF1 63215 102 - 1 GAUUGUUUUUCGAUUUUAGUCGAAGGAUAAAAAAAAAAGAACUGCGAAAUGAAAUUAGAUG-GGGACAUGAAGUCCAUUGAGCUGUUAGGAUUAGAAAUUUAU ..((((((((((((....)))))))))))).........(((.((..((((...((..(((-....))).))...))))..)).)))................ ( -21.60) >DroSim_CAF1 70843 99 - 1 GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGCGAAAUGAAAUUAGAUG-GGGACAUGAAGUCCAUUGAGCUGUUAGGAUUAGAUAUUUAU ..((((((((((((....))))))))))))..---....(((.((..((((...((..(((-....))).))...))))..)).)))................ ( -21.50) >DroEre_CAF1 64770 98 - 1 GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGUGUAACGAAAUUAGAUG-GGGACAAAAAGUCCAUUGAUCUGAAAGGAUUAGACUCUCA- ..((((((((((((....))))))))))))((---(..(((((.(((..(.(.......).-)..)))...))))).(((((((....)))))))..)))..- ( -27.40) >DroYak_CAF1 66597 99 - 1 GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG---AAAGGACUGUGAAAUGAAAUUAGAAGGGGGACUAAAAGUCCAUUGAUCUGAAAGGAUUAGACUUUCA- ..((((((((((((....)))))))))))).(---((((........................((((.....)))).(((((((....))))))).))))).- ( -27.70) >consensus GAUUGUUUUUCGAUUCUAGUCGGAGGAUAAAG___AAAGGACUGUGAAAUGAAAUUAGAUG_GGGACAUGAAGUCCAUUGAUCUGAUAGGAUUAGACUUUCA_ ..((((((((((((....)))))))))))).................................((((.....)))).(((((((....)))))))........ (-18.30 = -18.58 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:19 2006