Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,128,269 – 7,128,359 |
Length | 90 |
Max. P | 0.627687 |
Location | 7,128,269 – 7,128,359 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 91.92 |
Mean single sequence MFE | -21.61 |
Consensus MFE | -16.78 |
Energy contribution | -16.74 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.17 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7128269 90 + 27905053 ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUUCCACACAUACAUAUGCUAAUAC ....((((.(----(((...((((.......(((....))).......))))...)))).((.((((((....)))))).))..))))...... ( -21.24) >DroSec_CAF1 61210 90 + 1 ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUGCCACACACACAUAUGCUAAUAC .......(((----(............))))(((....)))................(((((.(((((((......))))))).)))))..... ( -22.30) >DroSim_CAF1 68764 90 + 1 ACACGCAUCC----UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUGCCACACACACAUAUGCUAAUAC .......(((----(............))))(((....)))................(((((.(((((((......))))))).)))))..... ( -22.30) >DroEre_CAF1 62632 94 + 1 ACACGCAUCCUGCCUGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUUUAUUCCUGCGUAUGUGUGCUUCUACACAUACAUAAGCUAAUAC ....(((((((.(((....)).)....))))(((....)))................)))(((((((((....)))))))))............ ( -22.40) >DroYak_CAF1 64413 90 + 1 ACACGCAUCC----UGGCAAGUGAAAAAGGAGCCAUAAGCUGUUUAAAUUAUAUCCCUGCGUCUGUGUGCUUCUGCACAUACAUAUGCUAAUAC ..........----(((((.(((...(((.(((.....))).)))..................(((((((....)))))))))).))))).... ( -19.80) >consensus ACACGCAUCC____UGGCAAGUGAAAAAGGAGGCAUAAGCCGUUUAAAUUAUAUCCCAGCGUCUGUGUGUUUCCACACAUACAUAUGCUAAUAC ..............(((((.(((........(((....)))......................(((((((....)))))))))).))))).... (-16.78 = -16.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:13 2006