Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,127,013 – 7,127,110 |
Length | 97 |
Max. P | 0.890900 |
Location | 7,127,013 – 7,127,110 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -18.22 |
Energy contribution | -18.98 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.08 |
Mean z-score | -2.67 |
Structure conservation index | 0.52 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7127013 97 - 27905053 AUUUCGAUGCUGC------------UCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAUU-UUCGGGGGGAAU ....(((((.(((------------....((((((((..(((((((((.....)))))))))...).).--)))--))).)))..)))))((((((.(...-..).)))))).. ( -35.10) >DroSec_CAF1 59966 96 - 1 AUUUCGAUGCUGC------------UCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAUU-UUCGGG-GGAAU ....(((((.(((------------....((((((((..(((((((((.....)))))))))...).).--)))--))).)))..)))))((((((((...-.)))))-))).. ( -35.80) >DroSim_CAF1 67501 108 - 1 AUUUCGAUGCUGCUCCUGAUGCUGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC--UGC--GUCUGCGUCCAUUGUCCUCCAGAUU-UUCGGG-GGUAU ....(((((.(((....(((((.((.......(((....(((((((((.....)))))))))..)))))--.))--))).)))..))))).(((((.....-...)))-))... ( -32.71) >DroYak_CAF1 63097 108 - 1 AUUUCGAUGCUGCUGCUGAUGCCGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUCCGC--UGC--GUCUGCGUCCAUUGUCCUCCGGAGU-UUUGGG-CGAAU .....(((((.((.((....)).))....((((((.(..(((((((((.....))))))))).....).--)))--))).)))))..((((((........-...)))-))).. ( -33.70) >DroAna_CAF1 67807 108 - 1 AUUCUG-----GCUGCUGAUGCUGCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGUGCCCUGCGAGUCUGCGUCCAUUGUCCUGUGAAAAGUGCAGG-GGCUG .....(-----(((...(((((.(((((....((((...(((((((((.....)))))))))...))))...).))))..)))))......(((((.......)))))-)))). ( -38.00) >consensus AUUUCGAUGCUGCU_CUGAUGC_GCUCCUGAUGCACCUUUGAUAUGCAAUUUAUGCAUGUCAUCUGCGC__UGC__GUCUGCGUCCAUUGUCCUCCGGAUU_UUCGGG_GGAAU .............................((((((....(((((((((.....))))))))).....((...)).....)))))).....(((((((((...)))))).))).. (-18.22 = -18.98 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006