| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,125,707 – 7,125,801 |
| Length | 94 |
| Max. P | 0.767749 |
| Location | 7,125,707 – 7,125,801 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -19.06 |
| Energy contribution | -20.34 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7125707 94 - 27905053 ------GGUUGGAGGU------GAGCUCAGCUGGGAGCGGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAA-----CACCCUCCGCCACCCAACAAAAAA---- ------(((.((((((------(.((((((..(..((((....(((.(((((....))))).)))))))..).)).))))..-----)).)))))))).............---- ( -30.00) >DroSec_CAF1 58657 95 - 1 ------GGUUGGAGGU------GCGCUCAGCUGGGAGCGGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAA-----CACCCUCCGCCACCAAAAAA---AAAAC ------(((.((((((------(.((((((..(..((((....(((.(((((....))))).)))))))..).)).))))..-----)).)))))))).........---..... ( -30.20) >DroSim_CAF1 66186 98 - 1 ------GGUUGGAGGU------GCGCUCAGCUGGGAGCGGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAA-----CACCCUCCGCCACCCAAAAAAAAAAAAC ------(((.((((((------(.((((((..(..((((....(((.(((((....))))).)))))))..).)).))))..-----)).))))))))................. ( -30.20) >DroEre_CAF1 60126 103 - 1 ------GGUUGGAGGU------GCGCUCAGCUGGGAGCAGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAACUACACACCCACCUCGGCCCAAAACGAAAAAAA ------((.(.(((((------((.....)).(((.((((((..............))))))((..((((......))))..)).....)))))))).).))............. ( -28.14) >DroYak_CAF1 61766 109 - 1 ------GGUUGGAGGUGGAGCUGCGCUCAGCUGGGAGCAGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAACUACACACCCACAACCGCCCAAAAAACCAAACA ------((((.(.((((((((((....)))))(((.((((((..............))))))((..((((......))))..)).....)))....))))))....))))..... ( -34.64) >DroAna_CAF1 66425 81 - 1 AGGUGGGGUUAGAGCU------CCGCUCAGCUGGGAGAAUUCUCCUUCAAUUUAUCGAUUGCAGGCGCCUUCCCUCGAGCGA-----CCCCC----------------------- ....((((((.((((.------..)))).((((((.(((..(.(((.(((((....))))).))).)..))).))).)))))-----)))).----------------------- ( -29.10) >consensus ______GGUUGGAGGU______GCGCUCAGCUGGGAGCAGUCUUCUUCAAUUUAUCGAUUGCAGGCGCUUUCCCUAGAGCAA_____CACCCUCCGCCACCCAAAAAAAAAAAA_ ......(((.(..(((........((((....(((((.(((..(((.(((((....))))).))).))))))))..))))........)))..).)))................. (-19.06 = -20.34 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:11 2006