Locus 2642

Sequence ID 3R_DroMel_CAF1
Location 7,125,397 – 7,125,494
Length 97
Max. P 0.983506
window4294

overview

Window 4

Location 7,125,397 – 7,125,494
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 94.23
Mean single sequence MFE -20.84
Consensus MFE -19.35
Energy contribution -19.90
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.93
SVM decision value 1.95
SVM RNA-class probability 0.983506
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7125397 97 - 27905053
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCCUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCCGCCCCAAACCCCGAGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. ( -22.67)
>DroSec_CAF1 58348 97 - 1
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCCUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCCACCCCAAACCCCGAGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. ( -22.37)
>DroSim_CAF1 65876 97 - 1
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCCUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCCGCCCCAAACCCCGAGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. ( -22.67)
>DroEre_CAF1 59821 97 - 1
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCAUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCGGCCCCAAACCCCGAGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. ( -22.97)
>DroYak_CAF1 61464 97 - 1
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCAUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCCGCCCCAAACCCCGGGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. ( -22.67)
>DroAna_CAF1 66108 91 - 1
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUG-----GCCACCAUUUUGAAUAACAAGUGCGCAG-GGUAGCCCCCCCAUACCUCCCAUUC
.............(((..........((((((((....-----.....))))))))........)))(..(-((((.........)))))..).... ( -11.67)
>consensus
AAACAUAAGCAAUGCAAAGAAAAAACUCAAAAUGCAUGGCCUGGCCACCAUUUUGAAUAACAAGUGCGCAGGGGUAGCCGCCCCAAACCCCGAGAUC
........((...(((..........((((((((..((((...)))).))))))))........))))).(((((....)))))............. (-19.35 = -19.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:10 2006