Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,121,743 – 7,121,841 |
Length | 98 |
Max. P | 0.876720 |
Location | 7,121,743 – 7,121,841 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.16 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -15.06 |
Energy contribution | -14.73 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.17 |
Mean z-score | -2.91 |
Structure conservation index | 0.66 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7121743 98 + 27905053 AAAAGUUCGAAGUGCAAAACUUGGGAAUUAUAAUGUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUUAAGAAUUAGUUCAGUAGUCUACAAGCACUUUG .......((((((((....(....)........((((((((((((.((.((((((((.....))..)))))))).))))))..)))))).)))))))) ( -25.20) >DroSec_CAF1 54847 87 + 1 AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUAUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUGAA-----------GUAGUCUAUAAGUACUUCG .......((((((((..(((((.(...........).)))))...(((((((((((.........)))-----------).)))))))..)))))))) ( -24.20) >DroSim_CAF1 62285 87 + 1 AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUGUGGAGCAGAAGUGGAUUCUUCUAGAAAAGUUAA-----------GUAGUAUACAAGUACUUCG .......((((((((...((((.(.(.......).).))))(((((......)))))...........-----------...........)))))))) ( -18.90) >consensus AAAAGUUCGAAGUGCAAAGCUUGAGAAUUGUAAUGUGGAGCUGAAGUGGAUUCUUCUAGAAAAGUUAA___________GUAGUCUACAAGUACUUCG .......((((((((...((((.(.(.......).).)))).((((......))))..................................)))))))) (-15.06 = -14.73 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:09 2006