Locus 2640

Sequence ID 3R_DroMel_CAF1
Location 7,121,635 – 7,121,725
Length 90
Max. P 0.637842
window4292

overview

Window 2

Location 7,121,635 – 7,121,725
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.42
Mean single sequence MFE -14.52
Consensus MFE -10.77
Energy contribution -10.93
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.74
SVM decision value 0.22
SVM RNA-class probability 0.637842
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7121635 90 + 27905053
-CUGCUCCUCUUUUCCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAUGACCUUUACCCCCU------C-
-...............(((.((((......((((((.....)))))).)))).))).....(((............)))...........------.- ( -12.90)
>DroSec_CAF1 54739 90 + 1
-CUGCUCCUCUUUUCCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAGGACCUUUACCCUCC------C-
-...............(((.((((......((((((.....)))))).)))).))).....((((..........))))...........------.- ( -13.40)
>DroSim_CAF1 62179 88 + 1
-CUGCUCCUCUUUUCCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAGGACCUUUACC--CC------C-
-...............(((.((((......((((((.....)))))).)))).))).....((((..........)))).......--..------.- ( -13.40)
>DroEre_CAF1 56104 75 + 1
--------------CCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAGGACCUUUACC--CC------U-
--------------..(((.((((......((((((.....)))))).)))).))).....((((..........)))).......--..------.- ( -13.40)
>DroYak_CAF1 57623 87 + 1
ACUGCUCCUCG--UCCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAAUACCUUUACC--CC------U-
..........(--(..(((.((((......((((((.....)))))).)))).)))..))..........................--..------.- ( -13.00)
>DroAna_CAF1 62513 83 + 1
-------------CCGCGGCGCUCCCUCUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACUGUCGCCCAUUCCGUGAAUCCUUGCC--CCGCCCUUCA
-------------..((((.((.....(((((((((.....)))))).)))...........((((.......))))......)).--))))...... ( -21.00)
>consensus
_CUGCUCCUCU__UCCUGUCGCUCCCUUUCCGCAUAAUUUGUAUGCGCGAGCCGCAUAACCGUCUCCCAUUCCAAGGACCUUUACC__CC______C_
.................((.((((......((((((.....)))))).)))).))........................................... (-10.77 = -10.93 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006