Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,040,544 – 1,040,664 |
Length | 120 |
Max. P | 0.654187 |
Location | 1,040,544 – 1,040,664 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.44 |
Mean single sequence MFE | -25.70 |
Consensus MFE | -21.91 |
Energy contribution | -21.70 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.17 |
Mean z-score | -1.56 |
Structure conservation index | 0.85 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1040544 120 - 27905053 AUAGCCACAGUUGACGGCCUGUUAAACGAUAAGUUGGUCAAAACGAUUGCUUAGCAAUAGCUUAUAGGUAUUGCACCUUCGGCUCGCUAAAAGAAAAAUGUUGAUCUAUCCUAAAUUAAA .((((...((((((.((............(((((.((((.....)))))))))((((((.(.....).)))))).)).)))))).))))............................... ( -22.70) >DroSec_CAF1 12186 107 - 1 AUAGCCACAGUUGAAGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGUUUAUAGCUAUUGCAACUUCAACUCGCU-----------CUUGUUC--CCCUAAAUGACA ..(((...(((((((((((.(((........))).))))..........(((.((((((((.....)))))))))))))))))).)))-----------.......--............ ( -26.90) >DroSim_CAF1 12203 107 - 1 AUAGCCACAGUUUACGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGCUUAUAGCUAUUGCAACUUCAACUCGCU-----------CUUGUUC--CCCUAAAUGAAA .((((((..((((..((((.(((........))).)))).))))...))))))((((((((.....))))))))..............-----------.......--............ ( -27.50) >consensus AUAGCCACAGUUGACGGCCUGCUAAACGAUAAGUUGGUCAAAACGAUUGGUUAGCAAUAGCUUAUAGCUAUUGCAACUUCAACUCGCU___________CUUGUUC__CCCUAAAUGAAA ..(((...((((((.((((..((........))..))))..............((((((((.....))))))))....)))))).)))................................ (-21.91 = -21.70 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:59 2006