Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,120,193 – 7,120,298 |
Length | 105 |
Max. P | 0.976783 |
Location | 7,120,193 – 7,120,298 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 70.51 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -15.90 |
Energy contribution | -15.94 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.43 |
Mean z-score | -1.40 |
Structure conservation index | 0.76 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7120193 105 + 27905053 UCGAAGCUUCUGUGUUCUCUGGAUUUUGGCAUAUUGCUAGAAUUUUACUACACAAUUGUUUCCUCAAAUCACAAAUCUGUGUCGGGGUCCUAAAACGACGUCUAC ..(((((...(((((.....((((((((((.....))))))))))....)))))...))))).......((((....))))..((.(((.......))).))... ( -25.20) >DroSec_CAF1 53320 104 + 1 UCGAAGCUUCUGUGU-CUCUGGAUUUCAGCAUAUUGCUAGAAUUUAACUACACAAUUGUUUCCUCAAAUCACUAAUCUGUGUCGAAGUCCAAAAACGACGUCUAC ..(((((...(((((-...((((((..(((.....)))..))))))...)))))...))))).......(((......)))..((.(((.......))).))... ( -21.20) >DroSim_CAF1 60745 104 + 1 UCGAAGCUUCUGUGU-CUAUGGAUUUUAGCAUAUUGCUAGAAUUUUACUGCACAAUUGUUUCCUCAAAUCACAAAUCUGGGUCGAAGUCCAAAAACGACGUCUAC ..(((((...(((((-....((((((((((.....))))))))))....)))))...)))))..................((((...........))))...... ( -23.30) >DroEre_CAF1 54756 81 + 1 UUGAAAGUAGUCUGC-CCCAAGAUUUUUGCAUAUUGCUAGAACUUUAUUACAGAAUUUGUUCCUCAAAUCAGAAAUGAGUG---A-------------------- ((((.((((((.(((-............))).)))))).((((...(((....)))..)))).)))).(((....)))...---.-------------------- ( -12.00) >DroYak_CAF1 56186 84 + 1 UUGAGGGUCCUCUGU-GCCGAGAUUUUGGCAUAUUGCUAGGAUUUUACUACAGAAUUGUUCCAUCAAACCACAAAGGAGUG---AA-----------------AU ((((.((..((((((-(..(((((((((((.....)))))))))))..))))))...)..)).))))..(((......)))---..-----------------.. ( -23.40) >consensus UCGAAGCUUCUGUGU_CUCUGGAUUUUAGCAUAUUGCUAGAAUUUUACUACACAAUUGUUUCCUCAAAUCACAAAUCUGUGUCGAAGUCC_AAAACGACGUCUAC ..(((((...(((((....(((((((((((.....)))))))))))...)))))...)))))........................................... (-15.90 = -15.94 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:07 2006