Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,119,698 – 7,119,800 |
Length | 102 |
Max. P | 0.500000 |
Location | 7,119,698 – 7,119,800 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -17.06 |
Energy contribution | -19.20 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.07 |
Mean z-score | -1.50 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7119698 102 - 27905053 UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUAUUCGGAGGAGGCCGUGGCCAGAACCAGUGCGAACCUACCAGAAUGGAACAGCCCC ..((((......((((((..(((((....))))).))))))(((..(((((((((.(((....))).(........)...))).)).)))))))...)))). ( -31.40) >DroSec_CAF1 52833 81 - 1 UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA---------------------GAACCUACCAGAAUGGAACAGCCCC ..((((......((((((..(((((....))))).))))))(((.((((.(((((.---------------------...))).)))))).)))...)))). ( -26.70) >DroSim_CAF1 60257 81 - 1 UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA---------------------GAACCUACCAGAAUGGAACAGCCCC ..((((......((((((..(((((....))))).))))))(((.((((.(((((.---------------------...))).)))))).)))...)))). ( -26.70) >DroEre_CAF1 54252 102 - 1 UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGAGGCCGUGGCCAGAACCAAAGCGAACCUACCAGAAUGGAACAGCCCC ..((((......((((((..(((((....))))).))))))(((.((((.(((((..((..(((......)))..))...))).)))))).)))...)))). ( -32.70) >DroYak_CAF1 55661 102 - 1 UUUGGCCAUCAUCCAUCGCCACAGCAUCCGUUGUUCGAUGCUCCUUUUUCGGAGGAGGCCGUGGCCAGAACCAAAGCGAACCUACCACUAUGGAACAGCCCC (((((((((....(((((..(((((....))))).)))))((((((.....))))))...))))))))).(((.((.(.......).)).)))......... ( -33.20) >DroAna_CAF1 60536 78 - 1 CUGGG--ACCAUCUAUCGUCACAGCAUCCGUUGCUCAAUAGUCCUUUUUGGGAA----------------------CGAACCUACCGGCAUGGAACGGCCCU ..(((--.((.(((((.(((..((((.....))))......((((....)))).----------------------..........))))))))..))))). ( -20.50) >consensus UUGGGCCAUCAUCUAUCGUCACAGCAUCCGUUGUUCGAUGGUCCUUUUUCGGAGGA____________________CGAACCUACCAGAAUGGAACAGCCCC ..((((......((((((..(((((....))))).))))))(((...((.(((((..((..(((......)))..))...))).)).))..)))...)))). (-17.06 = -19.20 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:06 2006