Locus 2635

Sequence ID 3R_DroMel_CAF1
Location 7,112,335 – 7,112,445
Length 110
Max. P 0.736183
window4287

overview

Window 7

Location 7,112,335 – 7,112,445
Length 110
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.11
Mean single sequence MFE -32.20
Consensus MFE -16.84
Energy contribution -16.85
Covariance contribution 0.01
Combinations/Pair 1.36
Mean z-score -2.00
Structure conservation index 0.52
SVM decision value 0.44
SVM RNA-class probability 0.736183
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7112335 110 + 27905053
GAAGUU-UGGGGAUGGGAA-------GGAUGUGCUCAAUUGGAUUCAUUCGGGCGAAAGUGUUUGGAAUCCUGUUUAGACC-ACAAUGGCGAAAUUUCAGGUCUACAGAUUUUUAAGUA
((((((-((..(((..(((-------(....(((.((...((((((....(.((....)).)...))))))(((.......-))).)))))...))))..)))..))))))))...... ( -27.60)
>DroSec_CAF1 45387 110 + 1
GAAGUU-UGAGGACAGGAG-------GGAUGUGUUCACUUGGAUUCAUUUGGGCGAAAGUGCUUGGAAUCCUGUUUAGACC-AAAGUGGCGAAAUUUCAGGUCUACAGAUUUUUAAGUA
((((((-((.((((..(((-------(....(((.(((((((((((....(.((....)).)...)))))).((....)).-.))))))))...))))..)))).))))))))...... ( -31.90)
>DroSim_CAF1 52260 110 + 1
GAAGUU-UGAGGACAGGAG-------GGAUGUGCUCACUUGGAUUCAUUCGGGCGAAAGUGCUUGGAAUCCAGUUUAGACC-AAAGUGGCAAAAUUUCAGGUCUACAGAUUUUUAAGUA
((((((-((.((((..(((-------(....(((.(((((((((((....(.((....)).)...)))))).((....)).-.))))))))...))))..)))).))))))))...... ( -35.30)
>DroEre_CAF1 46786 110 + 1
GAAGGC-UGCGGAUAGGGA-------GGAUGUGCUCCCUUGUAUUCAUCCAGGCGAAAGUGCUUGGAAUCCUGUUUAGACC-AAUAUGCAGAAAUUUCAGGUCUACAGGCUUUUAAGUA
((((.(-((.(((((((((-------(......))))))........((((((((....))))))))))))....((((((-.................))))))))).))))...... ( -36.23)
>DroYak_CAF1 47988 111 + 1
GAAGGUUUGCGGAUGGGGA-------GGAUGUGCUCAGUUGGAUUCAUCCAGGCGAAAGUGCUUGGAAUCCUGUUUAGAGC-AAAGUGCAGAAAUUUCAGGUCUACAGGUUUUUAAGUA
(((((..((..(((..(((-------(..((..((.....((((...((((((((....))))))))))))(((.....))-).))..))....))))..)))..))..)))))..... ( -31.10)
>DroAna_CAF1 52309 108 + 1
AGAGU---G-GGAAAGGAAACUCCAUGGAGUUGGUCACUUGGAUUCAACCAAGCGAACAGGCCUCAAAUCCUGUUUGGCCCCAAGGUGUUUAGAUU-AAG--CCACAGA----AAAGUA
...((---(-(......((((.((.(((....((((.(((((......))))).(((((((........)))))))))))))).)).)))).....-...--))))...----...... ( -31.04)
>consensus
GAAGUU_UGAGGAUAGGAA_______GGAUGUGCUCACUUGGAUUCAUCCAGGCGAAAGUGCUUGGAAUCCUGUUUAGACC_AAAGUGGCGAAAUUUCAGGUCUACAGAUUUUUAAGUA
...........(((((((........((((.(........).)))).(((((((......))))))).)))))))((((((...(((......)))...)))))).............. (-16.84 = -16.85 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:04 2006