Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,110,699 – 7,110,792 |
Length | 93 |
Max. P | 0.564317 |
Location | 7,110,699 – 7,110,792 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -35.37 |
Consensus MFE | -24.09 |
Energy contribution | -24.95 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.19 |
Mean z-score | -1.41 |
Structure conservation index | 0.68 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7110699 93 + 27905053 GGAGACACGCA--ACGCGUGGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGGGGGA---CGGAUGGAUAACCC---------------CAGCCGGGAUUCCCCCG ((...(((((.--..)))))(((((((((....))))....))))).....)).....((((((---(((.(((......)---------------)).)))....)))))). ( -36.40) >DroSec_CAF1 43714 92 + 1 GGAGACACGCA--ACGCGUGGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGG-GGA---CGGAUGGAUAACCC---------------CAGCCGGGAUUCCCCCG ((...(((((.--..)))))(((((((((....))))....))))).....)).....((-(((---(((.(((......)---------------)).)))....))))).. ( -32.20) >DroSim_CAF1 49766 93 + 1 GGAGACACGCA--ACGCGUGGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGGGGGA---CGGAUGGAUAACCC---------------CAGCCGGGAUUCCCCCG ((...(((((.--..)))))(((((((((....))))....))))).....)).....((((((---(((.(((......)---------------)).)))....)))))). ( -36.40) >DroEre_CAF1 44937 95 + 1 GGAGACACGCA--ACGCGUGGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGGGGGACGACGGAUGGAUCAUCC---------------CA-CCUUGAUUCCCCUG ((...(((((.--..)))))(((((((((....))))....))))).....)).....(((((((((.((.(((......)---------------))-))))).)))))).. ( -33.60) >DroYak_CAF1 46097 107 + 1 GGAGACACGCA--ACGCGUCGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGGGGGA---CGGAUGGAACACCCAACGUUACCCCACCACA-CCGGGAUUCCCCUG ((.........--..((((.(((((((((....))))....))))))))).......(((((((---((..(((.....))).)))).)))))))...-..(((....))).. ( -34.50) >DroAna_CAF1 50509 97 + 1 GGAGACACGCAUAGCGUGUGGAACGUCUGCGAGCAGAUUAACGUGCACGUUCUGAAAGGG-GGAUUCCGGGGAGUCUCCCU---------------CACACGGCGCCUGCUUG (....)..(((..(((((((((((((.((((..........)))).))))))....((((-((((((....))))))))))---------------))))).))...)))... ( -39.10) >consensus GGAGACACGCA__ACGCGUGGAACGUCUGCGAGCAGAUUAACGUUCACGUACCGAAAUGGGGGA___CGGAUGGAUAACCC_______________CAGCCGGGAUUCCCCCG ((...(((((.....)))))(((((((((....))))....))))).....)).....((((((...(((.((.......................)).)))....)))))). (-24.09 = -24.95 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:01 2006