Locus 2632

Sequence ID 3R_DroMel_CAF1
Location 7,107,417 – 7,107,527
Length 110
Max. P 0.500000
window4284

overview

Window 4

Location 7,107,417 – 7,107,527
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 91.20
Mean single sequence MFE -26.23
Consensus MFE -17.81
Energy contribution -18.88
Covariance contribution 1.06
Combinations/Pair 1.05
Mean z-score -2.33
Structure conservation index 0.68
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7107417 110 - 27905053
UUAUUUUAUUCAAACUCUUCUGCUUCUUCAGUCACUCGGCGAGAGAGAAAUCCUUCGGCUGGCUGUCCGGCUCUCUCUCUCUCGCUCACAGGACACGCUCUCUCUCUUUU
..............................(((.((.(((((((((((........((((((....))))))...)))))))))))...)))))................ ( -28.50)
>DroSec_CAF1 40426 106 - 1
UUAUUUUAUUCAAACUCUUCUGCUUCUUCAGUCACUCGGCGAGAGAGAAAUCCUUCGGCUGGAUGGCUGGCACUCU--CUCUCGCACACAGGACACGCUCU--CUCUUUU
..............................(((.....((((((((((......((((((....))))))...)))--)))))))......))).......--....... ( -27.60)
>DroSim_CAF1 46443 106 - 1
UUAUUUUAUUCAAACUCUUCUGCUUCUUCAGUCACUCGGCGAGAGAGAAAUCCUUCGGCUGGAUGGCUGGCUCUCU--CUCUCGCUCACAGGACACGCUCU--CUCUUUU
..............................(((.((.(((((((((((......((((((....))))))...)))--))))))))...))))).......--....... ( -28.10)
>DroYak_CAF1 42960 101 - 1
UUAUUUUAUUCAAACUCCUCUGCUUCUUCAGUCACUCGGCGAGAGAGA-AUCCUUCGGCUGGCUGGCUCUC----U--CCCUCGCUCACAGGACUCGCUCU--CUCUUUU
..............................(((....)))(((((((.-.((((..(((.((..(.....)----.--.))..)))...))))....))))--))).... ( -20.70)
>consensus
UUAUUUUAUUCAAACUCUUCUGCUUCUUCAGUCACUCGGCGAGAGAGAAAUCCUUCGGCUGGAUGGCUGGCUCUCU__CUCUCGCUCACAGGACACGCUCU__CUCUUUU
..............................(((.((.((((((((.(((....))).(((((....))))).......))))))))...)))))................ (-17.81 = -18.88 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:01 2006