| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,099,704 – 7,099,795 |
| Length | 91 |
| Max. P | 0.974511 |
| Location | 7,099,704 – 7,099,795 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.80 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -8.97 |
| Energy contribution | -9.67 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.32 |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.974511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7099704 91 + 27905053 -AUCGUAAAUCAUAAAUAAAGCGUUGG-----------UGUAUGGCAACUGAAG---GGCCCCGACC--CUGUCUGGUCAAUUAU----UUGGCCAAUUGCGAACAAUAAUU -.((((((...........((.(((((-----------.((..(....).....---.)).))))).--))...(((((((....----))))))).))))))......... ( -22.50) >DroSec_CAF1 32749 91 + 1 -AUCGUAAAUCAUAAAUGAAGCGAUGG-----------GUUGGGGCAACUGAAU---GGCCCCGACC--CUGUCUGGCCAAUUAU----UUGGCCAAUUGCGAACAAUAAUU -.((((((..............(((((-----------((((((((........---.)))))))))--).)))(((((((....----))))))).))))))......... ( -39.50) >DroSim_CAF1 36602 91 + 1 -AUCGUAAAUCAUAAAUGAAGCGAUGG-----------GUUGGGGCAACUGAAG---GGCCCCGAAC--CUGUCUGGCCAAUUAU----UUGGCCAAUUGCGAACAAUAAUU -.((((((..............(((((-----------((((((((........---.))))).)))--)))))(((((((....----))))))).))))))......... ( -36.90) >DroWil_CAF1 33661 91 + 1 UAUCAUGAAUCAUUAAAUA----AUAA-----------AUCGCAACAACAGAAU---G---UUGACCCUCUGUCUGGUCAAUUAUAUUUUGGGCGAAUUGAGAACAAUAAUC ...................----.(((-----------.((((.....((((((---(---((((((........)))))...)))))))).)))).)))............ ( -16.60) >DroYak_CAF1 34890 100 + 1 -AUCGUAAAUCAUAAAUGAAAUGAUGCUGCGAUGGUCGGUGGGUGGAACUGAAG---GGC--UGACC--CCGUCUGGCCAAUUAU----UUGGGCAAUUGCGAACAAUAAUU -((((((.(((((.......)))))..))))))((((((.((((((..(....)---..)--).)))--)...))))))((((((----(.(.((....))...)))))))) ( -27.70) >DroAna_CAF1 34477 95 + 1 -CACGUAAAUCAUAAAU-AACUGAUGGGGUGAA---------AGGGAAUCGUGGGGUGGGUCUGACC--CUGUCUGGCCAAUUAU----UUGGGCAAUUGUGAACAAUAAUU -........((((((..-....((((((((...---------.(((.(((....)))...))).)))--)))))((.((((....----)))).)).))))))......... ( -23.40) >consensus _AUCGUAAAUCAUAAAUGAAGCGAUGG___________GUUGGGGCAACUGAAG___GGCCCCGACC__CUGUCUGGCCAAUUAU____UUGGCCAAUUGCGAACAAUAAUU ..((((((.......................................................(((.....)))(((((((........))))))).))))))......... ( -8.97 = -9.67 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:58 2006