Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,032,807 – 1,032,903 |
Length | 96 |
Max. P | 0.835324 |
Location | 1,032,807 – 1,032,903 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 83.62 |
Mean single sequence MFE | -18.69 |
Consensus MFE | -15.31 |
Energy contribution | -14.76 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.16 |
Mean z-score | -1.98 |
Structure conservation index | 0.82 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1032807 96 + 27905053 AAGUAUAAAAAUUAAUGCACUCUAGGGCAGCUUGGUAGCUUAUAAAGAAAUAAGUUUUAAAAUCGACAGUAAGUUUAGAAAAGGUUGUGGCGCCCA ..((((........))))......((((.((((((((((((((......))))))).....)))))((.(((.(((....))).))))))))))). ( -16.40) >DroSec_CAF1 4162 95 + 1 AUGUAUAAAAAUUAAUGCAUUCUAGGGCA-UUUAAUAGCUUAUAAAGAAAUAAGUAUUAAGACCAACAGGAAGAUUAGAAAAAACUGUGGCGCCCA ((((((........))))))....((((.-(((((((.(((((......)))))))))))).(((.(((...............)))))).)))). ( -21.56) >DroSim_CAF1 4184 86 + 1 AUGUAUAAAAAUUAAUGCAUUCUAGGGCA-UUUGGUAGCUUAUAAAGAAAUAAGUAUUAAGAUCGACAGGA---------AAAGUUGUGGCGCCCA ((((((........))))))....((((.-(((((((.(((((......))))))))))))..(.((((..---------....)))).).)))). ( -18.10) >consensus AUGUAUAAAAAUUAAUGCAUUCUAGGGCA_UUUGGUAGCUUAUAAAGAAAUAAGUAUUAAGAUCGACAGGAAG_UUAGAAAAAGUUGUGGCGCCCA ..((((........))))......((((...(((((.((((((......)))))))))))..((.((((...............)))))).)))). (-15.31 = -14.76 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:58 2006