Locus 2628

Sequence ID 3R_DroMel_CAF1
Location 7,096,212 – 7,096,303
Length 91
Max. P 0.948914
window4277

overview

Window 7

Location 7,096,212 – 7,096,303
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 95.24
Mean single sequence MFE -36.75
Consensus MFE -32.64
Energy contribution -33.95
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -2.43
Structure conservation index 0.89
SVM decision value 1.39
SVM RNA-class probability 0.948914
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7096212 91 + 27905053
GGCGGUUGGUCUGCUGGGAAGUUGGGCAGUUAAGGUGGUUGGUUCAACAGCCGCUUGUCUGAUUCUCCAAAGGACCAAGCCCCCAAGGACC
((.(((((((((..(((..(((..((((.....((((((((......))))))))))))..)))..)))..))))).)))).))....... ( -42.20)
>DroSec_CAF1 29293 89 + 1
GACGGUUGGUCUGCUGGGAAGUUGGGCAGUUAAGGUGGUUGGUUCAACAGCCGCUUGUCUGAUUCUCGAAAGGACCAAGCCCCCAAGGA--
...(((((((((..((((((.(..((((.....((((((((......))))))))))))..)))))))...))))).))))........-- ( -34.90)
>DroSim_CAF1 32070 91 + 1
GACGGUUGGUCUGCUGGGAAGUUGGGCAGUUAAGGUGGUUGGUUCAACAGCCGCUUGUCUGAUUCUCGAAAGGACCAAGCCCCCAAGGACC
.......(((((..((((...((((.(((...(((((((((......)))))))))..)))..((.(....)))))))...)))).))))) ( -35.50)
>DroYak_CAF1 31323 91 + 1
GGCGGUUGGGUUGUUGCGAAGUUGGGCAGUUAAGGUGGUUGGUUCAACAGCCGCUUGUCUGAUUCUCCAAAGGACCAAGCCCCCAAGGACC
((.((((.((((.(((.(((((..((((.....((((((((......))))))))))))..))).)))))..)))).)))).))....... ( -34.40)
>consensus
GACGGUUGGUCUGCUGGGAAGUUGGGCAGUUAAGGUGGUUGGUUCAACAGCCGCUUGUCUGAUUCUCCAAAGGACCAAGCCCCCAAGGACC
((.(((((((((..(((..(((..((((.....((((((((......))))))))))))..)))..)))..))))).)))).))....... (-32.64 = -33.95 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:54 2006