Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,095,806 – 7,095,899 |
Length | 93 |
Max. P | 0.994939 |
Location | 7,095,806 – 7,095,899 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 96.79 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -23.86 |
Energy contribution | -23.70 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.95 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.994939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7095806 93 + 27905053 GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUAUGCAGUCCAAUAAGAUGAGGCCAAGGCAAGGA ....................((((((((..((((.-..((..((((((((.............)))).))))...)).))))....)))))))) ( -24.72) >DroSec_CAF1 28887 93 + 1 GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA ....................((((((((..((((.-(((...((((((((.............)))).))))..))).))))....)))))))) ( -24.52) >DroSim_CAF1 31664 93 + 1 GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA ....................((((((((..((((.-(((...((((((((.............)))).))))..))).))))....)))))))) ( -24.52) >DroEre_CAF1 29667 93 + 1 GGCAUUCCACUUCUACAUCGUCCUUGUCGUCCUUU-UUUCACUUGGCUGCUGCCACUUACUCCGCAGUCCAAUAAGAUGAGGCCAAGGCAAGGA ....................((((((((..((((.-..((..((((((((.............)))).))))...)).))))....)))))))) ( -24.12) >DroYak_CAF1 30904 94 + 1 GGCAUUCCUCUUCUUCAUCGUCCUUGCCGUCCUUUUUUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA ....................((((((((..((((.((((...((((((((.............)))).)))).)))).))))....)))))))) ( -27.72) >consensus GGCAUUCCUCUUCUUCAUCGUCCUUGUCGUCCUUU_UUUCACUUGGCUGCUGCCACUUACUCUGCAGUCCAAUAAGACGAGGCCAAGGCAAGGA ....................((((((((..((((....((..((((((((.............)))).))))...)).))))....)))))))) (-23.86 = -23.70 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:53 2006