Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,093,249 – 7,093,348 |
Length | 99 |
Max. P | 0.929683 |
Location | 7,093,249 – 7,093,348 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.98 |
Mean single sequence MFE | -32.35 |
Consensus MFE | -22.19 |
Energy contribution | -24.17 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.10 |
Mean z-score | -1.87 |
Structure conservation index | 0.69 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7093249 99 + 27905053 ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA .(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).))) ( -35.60) >DroSec_CAF1 26338 99 + 1 ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUUUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA .(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.((((((..(((....)))...))))))..)))..)))))))).))) ( -32.90) >DroSim_CAF1 29117 99 + 1 ACGCCUUCCUGCGGAAGGACGAAC---------AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA .(.((((((((((......))..)---------))))..))).).(((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).))) ( -35.60) >DroEre_CAF1 27062 90 + 1 ACGGCUUCCUGCGGAAGGACGAAC------------------AGGACGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGAACCUGCUUCUCGG .((((.(((((((......))..)------------------)))).))(.((((((.(((.(((((((((((....))))).))))))..)))..)))))).).)). ( -26.80) >DroYak_CAF1 27966 108 + 1 ACGCCUUCCUGCGGAAGGACGAACUGGGCGAACAGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGUCCUGCUGCUCGA ....((((((.(....)..((..(((......)))..))))))))(((.((((((((((((.(((((((((((....))))).))))))..)).)))))))))).))) ( -41.60) >DroMoj_CAF1 32471 79 + 1 -CA--UC--AGCAGCAGCCCAU--------------------ACUUUGCGCAUUUGCGUCGCCAUAAAUAUUAAAUAUGAUACUUUAUGUAGUGGAGCUUGGGC---- -..--..--.......(((((.--------------------.(((..(((....)).....(((((((((((....))))).))))))..)..)))..)))))---- ( -21.60) >consensus ACGCCUUCCUGCGGAAGGACGAAC_________AGGACGAGGAGGUCGCGCGGCGGGACAGCCAUAAAUAUUAAAUAUGAUACUUUAUGCACUGGACCUGCUGCUCGA .(((((((.....))))).)).........................((.((((((((.(((.(((((((((((....))))).))))))..)))..)))))))).)). (-22.19 = -24.17 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:49 2006