Locus 2624

Sequence ID 3R_DroMel_CAF1
Location 7,092,087 – 7,092,180
Length 93
Max. P 0.969837
window4271

overview

Window 1

Location 7,092,087 – 7,092,180
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 91.50
Mean single sequence MFE -17.60
Consensus MFE -16.91
Energy contribution -17.27
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.44
Structure conservation index 0.96
SVM decision value 1.65
SVM RNA-class probability 0.969837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7092087 93 + 27905053
----AAGAAAAAACAGCAAGAAGGAACAUU--UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAAAAUUUUCAACAUCAACAUCAAGUUUGGGCA
----.(((((.(((((((((((.((.....--)).))))).)))))).))))).((((((((((((..................)))))))))...))) ( -18.57)
>DroSim_CAF1 27919 92 + 1
----AAGAAAAAACAGCAAGAAGGAACAUU--UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAAAAU-UUCAACAUCAACAUCAAGUUUGGGCA
----.(((((.(((((((((((.((.....--)).))))).)))))).))))).((((((((((((......-...........)))))))))...))) ( -18.63)
>DroEre_CAF1 25866 92 + 1
----AAGAAAAACCAGCAAGAAGGAACAUU--UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAA-AUUUUCAACAUCAACAUCAAGUUUGGGCA
----........((((((.(((((((((..--.((.....)).)))).))))).)))(((((((((...-..............))))))))))))... ( -17.13)
>DroWil_CAF1 26260 98 + 1
CUGAGAGAAAGAGAAGAAAAAACAAAAAUUUGUUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAAAA-UUUCAACAUCAACAUCAAGUUUGGGCA
....(((((.((.((..((((((((.......))))))))..)).)).))))).((((((((((((.....-............)))))))))...))) ( -16.53)
>DroYak_CAF1 26786 92 + 1
----AAGAAAAACCAGCAAGAAGGAACAUU--UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAA-AUUUUCAACAUCAACAUCAAGUUUGGGCA
----........((((((.(((((((((..--.((.....)).)))).))))).)))(((((((((...-..............))))))))))))... ( -17.13)
>DroAna_CAF1 26761 91 + 1
----AAC-AAAAACAGCAAGUAAGAACAUU--UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAAAA-UUUCAACAUCAACAUCAAGUUUGGGCA
----...-(((((.(((((..((((((...--..))))))..))))).))))).((((((((((((.....-............)))))))))...))) ( -17.63)
>consensus
____AAGAAAAAACAGCAAGAAGGAACAUU__UUGUUUUUCGUUGUUAUUUUUAUGCAACUUGAUGAAAAAUUUUCAACAUCAACAUCAAGUUUGGGCA
........(((((.(((((..(((((((.....)))))))..))))).))))).((((((((((((..................)))))))))...))) (-16.91 = -17.27 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:48 2006